Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g00141 | ATGCCTTTCTCGACTTTGCACCTTCTTTTGGTTCTTCATGCGTTCGATTTGCTTTTCTCTTGCTCAGGACAATCTTCAGTTTCACCACACATATACTTATCTCCTTCCTTACAGCCAAACCTGCAAACAATGACCTCGGAAATGTCAACAGAGCATGCAAGGTTGGAGTCGATAAGTTTTTCATTTGTGCCTTCAAAGTTACGTGGTAACTGGATATTTAAGTCTTCTTTGGGACCATCTACTGCTCCTGCACCCTCTCCAGGTCCTAGGAGTGCACCCTTACCCATCCGACATCATCGACGGCGTCGTGGACGACCTCATGTGGTTGCTCCTACCCCATCAAAAGACCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCAGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCATATGCTGTTTTCCCTGTGATGAACGAGCTTGAAAGTGAGATTGCAGTGGGGACTTATTTGGAGCAGAGCCAAGTGAAAATCATGGGTGCAACTGCAGACAGTCAAAATCAAGGAAGAACTATGGTGGACATAAATTTAGTACCTCTAGGAGAGAAGTTTGATAATACAACTGCAGTTCTGACATACAGAAGGTTTTGGGATAAAAAAGTGCATTTAAATATGACGCTTTTTGGTGATTATGAAGTTGTCTACATCAGCTATCCAGGGATTCCTTCTTCCCCGCCATATGGAGGGTACATGGGAAGTGCTCCTAGTGGAAGTGCGGGTGATCTTCCCATTACTGCAAATTTCGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTAGTGTTCATTGGAGCTCTCTCCATCTTTTTTAAATGGAGAAAAGTTGGCAGACCATCTAGTGCTGTTGGCCCTGTCTTCACGTCATCAATTAACAAAAGATCTGGTCTAGGATCAGCGTTATCAAGTAGCATTGCAAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACCAGTCTTCAATCTGTTAAAACATTTGCACTTTCTGAACTTGAGAAAGCAACAGACAAGTTTAGTTCAAAAAGGATTTTAGGTGAAGGGGGATTTGGCCGAGTTTACTGTGGTATTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACTCGGGACAATCAGAATAGAGACCGTGAATTTATTGCCGAAGTTGAGATGTTGAGTAGACTGCATCATCGGAATCTTGTGAAACTGATTGGGATATGCATTGAAGGACGAACGCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCTCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTTGACTGGGACGCACGATTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGCGTTATTCACCGTGATTTCAAGGCAAGTAATGTTCTGTTGGAAGTTGACTTCACCCCCAAGGTTTCGGATTTTGGATTGGCTAGGGAAGCAACGGAAGGAAGTGAACATATCTCAACACGGGTGATGGGGACTTTCGGGTATGTAGCCCCTGAATATGCAATGACTGGGCACCTGCTCGTCAAAAGTGATGTTTACAGTTATGGAGTTGTGCTACTTGAGCTTCTTTCGGGAAGAAAACCGGTGGACATGTCCCAACCACATGGTGAGGAGAATCTCGTAACGTGGGCGCGACCTCTATTGACCAGTAGAGAAGGTTTGGAGCAACTAGTGGATCCTTCTCTAGCTGGTACTTACGACTTCGATGACATGGCCAAGGTGGCTGCCATAGCTTCAATGTGCGTTCACCCAGAGGTGACCCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAACTAATATACAACGACACAGACGAGACATGTGCAGATTACTGCAGTCAAAAGGAGTCCTCTGCTCGGGACTCAGATTTCAAAGGCGACCTTGTCCCATCCGACAGCAGTTGGTGGAATGCCGGTGGCCTTACACCCCGACTGACATATGGTCAAGCCTCTTCCTTCATCACCATGGAATACAGCTCTGGCCCTCTTGAAGAGATGGAAAACCGCCCGTTTTCAACTTCAAGTTTGGTAGGCGACGAGATATCTTTGCCTATTCGGCATGGAAACAGGTCAGGTCCGTTACGAACCGCTCGAAGCAAGCCTGCGTTCTATAGATTTTCAGGAAGTAGGAGCGAGCATGGAGGATTTCTTACAAGGCCTCCTTGGAACAGCAGTGGGTTTTGGTCATTACGATTCTTCCTTCTTCTTTCCAAATCAACCAGGCTGAGAATGTCGTCGTCAACCTCCTCCTCCGTTTCGATTTCACTTCCTGAAAATCGTGTGGTTCTTGGTGTTGGTATTACGTCTGTTGATTTTTTGGCGGCAGTGGCTTCTTATCCAAATCCTGACGACAAAATTCGAACCACAAGCTTTAAGGTACAAGGTGGAGGAAATGTAGGTAATGCTTTAACTTCTGCGGCTCGGTTGGGTTTAACACCAAGGATAATTTCCAAGGTTGCAGATGATACTCAAGGAAGGAGCATAATGGAGGAGCTAGAAGCTGATGGCATAGATACATCATTTCTTGTAGTTTCTGAAGGGGGTATTTCATCATTTTCCTATATTATTGTGGATAATAAAACGCACACTCGTACATGCATCCTCACCCCAGGATCTCCTCCGATGGTGCCAGATGACCTTTCACGATCAAGCTTGCTGTCTGCTTTAAACGGGGCTAGAATTGTATATTCTGACGTAGGATTGCATGAAATTGCTTTGCTTGTTGCACGAGAGGCAGCTCGGCAGAATATACCTATGTTGATCGATGCCGAAAGGAAAAAGGAAGGTGTGGATGATCTCCTGGCATTTGCTAGTTATGTTGAATGGACTGAGGCACCATCGATTCCATCTGCACTTCTTTCCATGCTTCTGCGATATCCAAAACTCAGATTTGTGATTGTCACCTTGGGTGAAAATGGATGCATAATGCTCGAAAGAAATATTGATGAAACACCTGATCAAATGGAAGAGTTTGAAGTAGACAACTTACTTGAAGTGGTCAAGAGCAGAAGGGATGAGAATATAAATGTTCCAACTTTTGTTTCATCGCCAGTGGCCAAGTTGAGAGCTGAGGGGATAGGGACAGTTTGTGGCAGGCTGTTGCTCGGGACAGCTGAAAAAATACCGGAGTCCGAGATTGTTGATACGACCGGTGCTGGAGATGCATTCGTTGGAGCAGTTCTTTATGCCTTATGTGCCAACATGCCACCAGAGAACTTATTGCCATTTTCTGCTCAAGTGGTTTTACGGCCACAAACTTGGGGAAAACAAGTTCTAATGCCAGATTTGATGCTTTCTTCTGATGAACCAGCTATTATGAAGGCTTTATCTCTTCATTTGGGGAGGAGGATTTCTTTTAGGAGGGTGAAGAAAAGTGCTGAAGCTCTGGAAATCCGGATTCTGAAGAATTGA | 3549 | 44.77 | MPFSTLHLLLVLHAFDLLFSCSGQSSVSPHIYLSPSLQPNLQTMTSEMSTEHARLESISFSFVPSKLRGNWIFKSSLGPSTAPAPSPGPRSAPLPIRHHRRRRGRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELESEIAVGTYLEQSQVKIMGATADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGSAGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFIGALSIFFKWRKVGRPSSAVGPVFTSSINKRSGLGSALSSSIASSTSVSLISTMPTSLQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGILEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGTYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGFLTRPPWNSSGFWSLRFFLLLSKSTRLRMSSSTSSSVSISLPENRVVLGVGITSVDFLAAVASYPNPDDKIRTTSFKVQGGGNVGNALTSAARLGLTPRIISKVADDTQGRSIMEELEADGIDTSFLVVSEGGISSFSYIIVDNKTHTRTCILTPGSPPMVPDDLSRSSLLSALNGARIVYSDVGLHEIALLVAREAARQNIPMLIDAERKKEGVDDLLAFASYVEWTEAPSIPSALLSMLLRYPKLRFVIVTLGENGCIMLERNIDETPDQMEEFEVDNLLEVVKSRRDENINVPTFVSSPVAKLRAEGIGTVCGRLLLGTAEKIPESEIVDTTGAGDAFVGAVLYALCANMPPENLLPFSAQVVLRPQTWGKQVLMPDLMLSSDEPAIMKALSLHLGRRISFRRVKKSAEALEIRILKN | 1182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1588057 | 1603845 | + | ClCG07G001520.2 | Cla07g00141 | 276129 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g00141 | 1182 | Pfam | Protein tyrosine and serine/threonine kinase | 374 | 642 | IPR001245 | GO:0004672|GO:0006468 | |
Cla07g00141 | 1182 | ProSitePatterns | Protein kinases ATP-binding region signature. | 377 | 399 | IPR017441 | GO:0005524 | |
Cla07g00141 | 1182 | PANTHER | OS01G0750732 PROTEIN | 45 | 770 | - | - | |
Cla07g00141 | 1182 | CDD | STKc_IRAK | 377 | 646 | - | - | |
Cla07g00141 | 1182 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 493 | 505 | IPR008271 | GO:0004672|GO:0006468 | |
Cla07g00141 | 1182 | PRINTS | Ribokinase signature | 810 | 831 | IPR002139 | GO:0016301 | |
Cla07g00141 | 1182 | PRINTS | Ribokinase signature | 1011 | 1022 | IPR002139 | GO:0016301 | |
Cla07g00141 | 1182 | PRINTS | Ribokinase signature | 837 | 856 | IPR002139 | GO:0016301 | |
Cla07g00141 | 1182 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 | 45 | 770 | - | - | |
Cla07g00141 | 1182 | ProSitePatterns | pfkB family of carbohydrate kinases signature 2. | 1094 | 1107 | IPR002173 | GO:0016773 | |
Cla07g00141 | 1182 | CDD | ribokinase_group_B | 807 | 1126 | - | - | |
Cla07g00141 | 1182 | Gene3D | - | 807 | 1127 | IPR029056 | - | |
Cla07g00141 | 1182 | MobiDBLite | consensus disorder prediction | 79 | 115 | - | - | |
Cla07g00141 | 1182 | SUPERFAMILY | Ribokinase-like | 808 | 1124 | IPR029056 | - | |
Cla07g00141 | 1182 | MobiDBLite | consensus disorder prediction | 94 | 108 | - | - | |
Cla07g00141 | 1182 | Gene3D | Transferase(Phosphotransferase) domain 1 | 447 | 669 | - | - | |
Cla07g00141 | 1182 | SUPERFAMILY | Protein kinase-like (PK-like) | 355 | 650 | IPR011009 | - | |
Cla07g00141 | 1182 | ProSiteProfiles | Protein kinase domain profile. | 371 | 646 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla07g00141 | 1182 | Gene3D | Phosphorylase Kinase; domain 1 | 343 | 446 | - | - | |
Cla07g00141 | 1182 | Pfam | pfkB family carbohydrate kinase | 811 | 1025 | IPR011611 | - | |
Cla07g00141 | 1182 | Pfam | pfkB family carbohydrate kinase | 1085 | 1122 | IPR011611 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g01496 | Cla-Chr3:30528622 | Cla07g00141 | Cla-Chr7:1588057 | 0 | dispersed | |
Cla03g01614 | Cla-Chr3:32011279 | Cla07g00141 | Cla-Chr7:1588057 | 6.64E-99 | dispersed | |
Cla07g00141 | Cla-Chr7:1588057 | Cla09g00062 | Cla-Chr9:598165 | 0 | dispersed | |
Cla07g00141 | Cla-Chr7:1588057 | Cla07g00143 | Cla-Chr7:1614265 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80669 | PF07714 | PK_Tyr_Ser-Thr | 4.70E-46 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g00141 | - | - | csv:101203278 | 1405.96 |