Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00163 ATGGTGGTCTCTCTTACACTACAGTTTTCCACCGCTTCTTCAATCCCTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATCGATGATTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTCGGACGTAATGCGGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTATTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACGGGAAACGCCATGGTTCGAAGCTCGCCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCCATTTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCCATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCGAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGTGAAACCGAAAGTTCCAGTTGGGTGGTGAAGCAATGTGCTATCAGGATGTAA 1326 44.95 MVVSLTLQFSTASSIPFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGETESSSWVVKQCAIRM 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1854874 1863923 - ClCG07G001720.2 Cla07g00163 276151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00163 441 Pfam Pectate lyase 169 350 IPR002022 -
Cla07g00163 441 PANTHER PECTATE LYASE 39 427 - -
Cla07g00163 441 Gene3D - 86 427 IPR012334 -
Cla07g00163 441 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cla07g00163 441 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cla07g00163 441 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cla07g00163 441 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cla07g00163 441 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cla07g00163 441 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cla07g00163 441 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cla07g00163 441 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cla07g00163 441 SUPERFAMILY Pectin lyase-like 64 425 IPR011050 -
Cla07g00163 441 SMART amb_all 161 358 IPR002022 -
Cla07g00163 441 PANTHER PECTATE LYASE 18-RELATED 39 427 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00163 Cla-Chr7:1854874 Cla09g01903 Cla-Chr9:36705078 0 dispersed
Cla05g00372 Cla-Chr5:3399550 Cla07g00163 Cla-Chr7:1854874 0 wgd
Cla06g00739 Cla-Chr6:9598542 Cla07g00163 Cla-Chr7:1854874 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00163 K01728 - csv:101207204 811.986