Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00205 ATGGGGCCGGGAGTGCCCTTATCTGGTGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGGCGATTACACTATGCCCGAATGTTCCTGTTTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAGAATAAAGAATATCCGGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAACCCAAAGAGTTATATAGTAGAGGAGATATGGCAGGAACTTTCTAGAGCGAAATACAGGGAGTGGGAACAAGCCTCCACCGAACGTTCATGGGAATTACAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAATCTGAACTTGAAGGGTTCGTAGATGAAGCCGAAATTGCTCATCGGAAACAATTAAAATCACTAAGAACTGTGTTCGAAAAAGTTGCCGAGGCAGATGCGCCGTCTGAGGTGCCTGACTATCTCTGTTGTAAAATCACGCTCGATATTCTCCGCGATCCTGTTATTACTCCGAGCGGGGTTACTTATGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTTGGTAATTTCGATCCCATAACACGGGAGCTGCTTGACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTGCAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAAATTAA 846 44.8 MGPGVPLSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYIVEEIWQELSRAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEAEIAHRKQLKSLRTVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTN 281
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 2215063 2222720 + ClCG07G002160.1 Cla07g00205 276193
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00205 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Cla07g00205 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Cla07g00205 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Cla07g00205 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Cla07g00205 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Cla07g00205 281 SUPERFAMILY TPR-like 12 133 IPR011990 GO:0005515
Cla07g00205 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Cla07g00205 281 CDD RING-Ubox_CHIP 204 270 IPR045202 -
Cla07g00205 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515
Cla07g00205 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515
Cla07g00205 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Cla07g00205 281 SUPERFAMILY RING/U-box 199 278 - -
Cla07g00205 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515
Cla07g00205 281 SMART tpr_5 48 81 IPR019734 GO:0005515
Cla07g00205 281 SMART tpr_5 82 115 IPR019734 GO:0005515
Cla07g00205 281 SMART tpr_5 14 47 IPR019734 GO:0005515
Cla07g00205 281 PANTHER OS08G0113300 PROTEIN 9 280 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00205 Cla-Chr7:2215063 Cla11g01539 Cla-Chr11:29030178 7.10E-10 dispersed
Cla07g00205 Cla-Chr7:2215063 Cla02g01224 Cla-Chr2:25911001 7.89E-11 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00205 K09561 - csv:101215457 547.354