Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g00205 | ATGGGGCCGGGAGTGCCCTTATCTGGTGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGGCGATTACACTATGCCCGAATGTTCCTGTTTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAGAATAAAGAATATCCGGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAACCCAAAGAGTTATATAGTAGAGGAGATATGGCAGGAACTTTCTAGAGCGAAATACAGGGAGTGGGAACAAGCCTCCACCGAACGTTCATGGGAATTACAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAATCTGAACTTGAAGGGTTCGTAGATGAAGCCGAAATTGCTCATCGGAAACAATTAAAATCACTAAGAACTGTGTTCGAAAAAGTTGCCGAGGCAGATGCGCCGTCTGAGGTGCCTGACTATCTCTGTTGTAAAATCACGCTCGATATTCTCCGCGATCCTGTTATTACTCCGAGCGGGGTTACTTATGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTTGGTAATTTCGATCCCATAACACGGGAGCTGCTTGACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTGCAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAAATTAA | 846 | 44.8 | MGPGVPLSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYIVEEIWQELSRAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEAEIAHRKQLKSLRTVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTN | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2215063 | 2222720 | + | ClCG07G002160.1 | Cla07g00205 | 276193 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g00205 | 281 | ProSiteProfiles | TPR repeat profile. | 82 | 115 | IPR019734 | GO:0005515 | |
Cla07g00205 | 281 | Pfam | U-box domain | 204 | 276 | IPR003613 | GO:0004842|GO:0016567 | |
Cla07g00205 | 281 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 9 | 280 | IPR045200 | GO:0000209|GO:0061630 | |
Cla07g00205 | 281 | Pfam | Anaphase-promoting complex, cyclosome, subunit 3 | 50 | 108 | - | - | |
Cla07g00205 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 280 | IPR013083 | - | |
Cla07g00205 | 281 | SUPERFAMILY | TPR-like | 12 | 133 | IPR011990 | GO:0005515 | |
Cla07g00205 | 281 | SMART | Ubox_2 | 207 | 270 | IPR003613 | GO:0004842|GO:0016567 | |
Cla07g00205 | 281 | CDD | RING-Ubox_CHIP | 204 | 270 | IPR045202 | - | |
Cla07g00205 | 281 | Pfam | Tetratricopeptide repeat | 24 | 46 | IPR019734 | GO:0005515 | |
Cla07g00205 | 281 | ProSiteProfiles | TPR repeat profile. | 14 | 47 | IPR019734 | GO:0005515 | |
Cla07g00205 | 281 | ProSiteProfiles | U-box domain profile. | 203 | 277 | IPR003613 | GO:0004842|GO:0016567 | |
Cla07g00205 | 281 | SUPERFAMILY | RING/U-box | 199 | 278 | - | - | |
Cla07g00205 | 281 | Gene3D | Tetratricopeptide repeat domain | 8 | 144 | IPR011990 | GO:0005515 | |
Cla07g00205 | 281 | SMART | tpr_5 | 48 | 81 | IPR019734 | GO:0005515 | |
Cla07g00205 | 281 | SMART | tpr_5 | 82 | 115 | IPR019734 | GO:0005515 | |
Cla07g00205 | 281 | SMART | tpr_5 | 14 | 47 | IPR019734 | GO:0005515 | |
Cla07g00205 | 281 | PANTHER | OS08G0113300 PROTEIN | 9 | 280 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g00205 | Cla-Chr7:2215063 | Cla11g01539 | Cla-Chr11:29030178 | 7.10E-10 | dispersed | |
Cla07g00205 | Cla-Chr7:2215063 | Cla02g01224 | Cla-Chr2:25911001 | 7.89E-11 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g00205 | K09561 | - | csv:101215457 | 547.354 |