Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00206 ATGGCCAAAACAGGCGTCTTTGATTCTGATCCTGCAGTCATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACACAGACTTATCGTTGCTATAATTGATGACGATAATTACTCCACCGACACCATTGATAACGCTAAAGAAATTCTTTCTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGTTCTTCTTCTAATCTTTTCGAGAATCTCATTTGTCCTGAGGAATTTCGTTGTCCGCTCTCTAGAGAACTCATGAGAGATCCTGTCATTGTGTCTACTGGCGAGACATATGACAGACCCTTCATTCAGAAATGGTTAAAATCAGGGAACAGGACTTGCCCCAGAACTCAGCAAGTTCTTTCACACACCAACCTCACTCCCAATCACTTGATTCGTCAAATGATAGCTCAATGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGCGTCCGTGTTCATTATCTTGATGACGATGTCATAACAGAGGCTGATCGAGACCGTTTTCTCACTTTAATAGAGAAAATGTCTATGACAATATCTGAACAGAAAGCAGCTGCAAAGGAGCTTCGAATGTTGACGAAGCGAATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTATTAGTGTTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTGCCGAAACACCCAAGGTAATACCTCTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTGTTTACTCTGTCAGCTCTCGACTCAAACAAAGCAATCATTGGGAAAGCTGGTGCCTTGCAACCCCTTATCGACCTATTAGATGAGGGGCATCCTTTATCAATCAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATAATTCATGAAAACAAAGCAAGAGCCGTGCGAGATGGTGCAGTCCGAGTGCTTTTGAAAAAGATCATGAACCAGATGCATGTTGATGAGTTGTTGGCTATTCTGGCAATGCTATCATGCCATCAAAAAGCTATCGAAGAAATTGGAGAACTTGGAGCTGTCCCTTACTTACTCAGAATTATCAGGGAAAGTTCTTGTTCGCGTAACAAGGAAAATTGCATCGTGATCATCCATGCTATCTGCTTATACGATCGAACCAAGTGGAAGGATATGAGGGAGGAAGAGAAATGCTATCGAACTATATCTGAACTTGCTCAGAATGGAACTTCAAGGGCTAAGAGAAAGGCCAGTGGCATACTCGAAAGATTAAACAGGGTAGTTAATATGACCCATACCGCCTAA 1383 43.17 MAKTGVFDSDPAVMGKATELKRELHRLIVAIIDDDNYSTDTIDNAKEILSALKELKLRKRSRSSSNLFENLICPEEFRCPLSRELMRDPVIVSTGETYDRPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRQMIAQWCATRGIELQDRVRVHYLDDDVITEADRDRFLTLIEKMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSISVHTDLQEDVITTLLNLSIHDNNKKLVAETPKVIPLLMEALRSGTMETRSNAAAALFTLSALDSNKAIIGKAGALQPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSCHQKAIEEIGELGAVPYLLRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVVNMTHTA 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2228698 2230975 - ClCG07G002170.1 Cla07g00206 276194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00206 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 458 - -
Cla07g00206 460 SMART arm_5 368 409 IPR000225 GO:0005515
Cla07g00206 460 SMART arm_5 246 287 IPR000225 GO:0005515
Cla07g00206 460 SMART arm_5 288 328 IPR000225 GO:0005515
Cla07g00206 460 SUPERFAMILY ARM repeat 182 450 IPR016024 -
Cla07g00206 460 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Cla07g00206 460 CDD RING-Ubox_PUB 77 119 IPR045210 -
Cla07g00206 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Cla07g00206 460 PANTHER U BOX DOMAIN-CONTAINING 6 458 - -
Cla07g00206 460 Gene3D - 169 454 IPR011989 -
Cla07g00206 460 SUPERFAMILY RING/U-box 73 149 - -
Cla07g00206 460 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515
Cla07g00206 460 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Cla07g00206 460 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00206 Cla-Chr7:2228698 Cla07g00605 Cla-Chr7:11031387 1.98E-85 dispersed
Cla07g00206 Cla-Chr7:2228698 Cla02g01975 Cla-Chr2:34817875 3.38E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00206 - - csv:101215688 813.527