Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00213 ATGGCACCGCTCTTAAACGATCACTTCAGTTTTCAAACGCCAGAAAATGAGGCTGTTATTACTAAAAAAATTCCTCGCTCTGAACACACCAACAAGTATCCTACTTGGTATTCACCAGATACAGGAATTTGTCGTAGTGTTCATGCCCCCAGAGAAGTTCCCTCTGACCCATTTCTTGATGTTGTCTCCTTCATCTTCTCCTTCCAACACAATGGACATTCAGCTCTCATTGATTCCTCAACTGGAAATTCAATATCTTACAGAGAAATGTTTCGTATGGTCAAGTCTGTGGCTGCTGGCCTCCACAGGTTGGGTATATCACAAGGAGATGTAGTTTTGCTTGTGATACCAAATTCCATTTTCTATCCCATTATTCTTTTGGGGATCCTGTATTTGGGAGCAGTTATTACAACCATGTTTCCTCAAAGCAGTTCCGCAGAAATCAAGAAACGAACCAGTGATTGCAATGTGCGTTTCGCTTTTACAATGACTCAGAAAATTAAGAATGTCGAAGCACTGGGAATTCAGGCAATTGGGGTACCAGAAAATACGAATTTGGACTTGATGAGGCCTATGGGATTTTCTTCTTTTTATGAGCTTATTTCAGGTGGTTCTGATTTGAATAAAAGACCAGTGATTAGACAAGAAGATACGGCTGCTATATTGTTTTCTTCAGGTACTACTGGAGTGAGCAAAGGGGTTTTGTTAACACATAGAAATTTCCTATCTACGATCGAGCTTTTTGTCCGGTTTGAAGCTTCACAGTATGAATATTTGCCTACAGAGAATGTGTATTTGGCTGCTATACCAATGTTTCATATATATGGTCTCTCCATTTTTGTGATGGGATTAATGTCATTGGGGTCTAGTATTGTTGTAATGAGCAAATTTGATGTCAAAGAGGTGGTCAAGGCTATTGACAGATTTAAAGTCACACATTTTCCAGTTGTTCCACCAATAATGACAACTATGGCTAGGACTGCAGAGAAAATTGGGGTCCATAGATTTAGAAGTTTGAAACAAGTTTCTTGTGGGGCTGCTTCTTTGAACAAGAAGACCATTGACGATTTTGTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTGTAGGAACCCGCGGCTTCAATACCAAAAATATTAGAAATTATTTGTCAGTGGGACTTTTAGCTCCAAACACAGAAGCTAAAGTAGTTGATTGGGTTACCGGATCTTTCGTGCCTCCTGGTAAAACTGGCGAACTTTTGTTACGCGGACCTGGTTCAATGAAAGGGTACTTGAATAATCCAGAGGCAACAATGTCCACAATAGACCAAGAAAATTGGCTACATACTGGAGACATTGTCTACTTTGACCGAGAAGGATACTTATATGTTGTTGACCGTTTGAAGGAGGTTATAAAGTATAAAGGCTTTCAGATTGCTCCTACTGATTTAGAAGCTGTGGTGATCACACATCCAGAAGTTCTTGATACTGCAGTAACAGCGGCCAAAGATGAAGAATGTGGAGAGATTCCAGTGGCATTTGTGGTAAAGAAGCCAGGAAGCACACTCTCACAAAAAGATGTTATTGATTATGTTGCTCAACAGGTTGCACCATATAAAAAAATCAGAAAAGTGATTTTTACAGAATCAATACCAAAATCTGCTGCTGGCAAAGTACTTCGTAAGGAACTGGGGAAGTATATGCCTTCTAAACTATGA 1725 40.12 MAPLLNDHFSFQTPENEAVITKKIPRSEHTNKYPTWYSPDTGICRSVHAPREVPSDPFLDVVSFIFSFQHNGHSALIDSSTGNSISYREMFRMVKSVAAGLHRLGISQGDVVLLVIPNSIFYPIILLGILYLGAVITTMFPQSSSAEIKKRTSDCNVRFAFTMTQKIKNVEALGIQAIGVPENTNLDLMRPMGFSSFYELISGGSDLNKRPVIRQEDTAAILFSSGTTGVSKGVLLTHRNFLSTIELFVRFEASQYEYLPTENVYLAAIPMFHIYGLSIFVMGLMSLGSSIVVMSKFDVKEVVKAIDRFKVTHFPVVPPIMTTMARTAEKIGVHRFRSLKQVSCGAASLNKKTIDDFVQALPHVDFIQGYGMTESTAVGTRGFNTKNIRNYLSVGLLAPNTEAKVVDWVTGSFVPPGKTGELLLRGPGSMKGYLNNPEATMSTIDQENWLHTGDIVYFDREGYLYVVDRLKEVIKYKGFQIAPTDLEAVVITHPEVLDTAVTAAKDEECGEIPVAFVVKKPGSTLSQKDVIDYVAQQVAPYKKIRKVIFTESIPKSAAGKVLRKELGKYMPSKL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2301613 2312977 - ClCG07G002280.1 Cla07g00213 276201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00213 574 SUPERFAMILY Acetyl-CoA synthetase-like 69 569 - -
Cla07g00213 574 CDD 4CL 53 566 - -
Cla07g00213 574 Pfam AMP-binding enzyme C-terminal domain 486 560 IPR025110 -
Cla07g00213 574 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 572 - -
Cla07g00213 574 Pfam AMP-binding enzyme 69 476 IPR000873 -
Cla07g00213 574 Gene3D - 47 471 IPR042099 -
Cla07g00213 574 ProSitePatterns Putative AMP-binding domain signature. 221 232 IPR020845 -
Cla07g00213 574 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 28 572 - -
Cla07g00213 574 Gene3D - 472 571 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01577 Cla-Chr5:26748390 Cla07g00213 Cla-Chr7:2301613 7.69E-158 dispersed
Cla05g02181 Cla-Chr5:33407210 Cla07g00213 Cla-Chr7:2301613 1.30E-137 dispersed
Cla07g00213 Cla-Chr7:2301613 Cla10g01908 Cla-Chr10:34963679 4.02E-134 dispersed
Cla07g00213 Cla-Chr7:2301613 Cla10g01217 Cla-Chr10:26812380 3.19E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00213 K01904 - csv:101219578 1001.12