Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00216 ATGGAGCGAAATTACCCGTATGAGAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTCTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAATATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAAGAATGAAAGCAGTGGGACTCTTAGCAATTTCACCGGTGTAGAGGAAGATGACAGAGGGATGCAAATTGCCGAGGCTCTAAAATCACATGTCGAAGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTCGCCATTGGCAGTAACCTTGGTAGTATTGAAAGCACAGGAATGCAGTTAATGAACTTTGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAGGCATAGCAGACGTAAATGGTGTTTGTAAGAAGACCAATGATTCACTCATCCAGATATGCAAAGTGGAGGCTGGAGAAGAAGCTACAATAAACGAGTTTAATGTTGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGCGGCTATGATTACAGTGCAAATGCGGCTGAAATACTTGACGCCAAAGTACTTCCTTGTTCAAGAGTTTGTCAAGCAACCATTGAAGAATATGTGATAAATTGTTTCACTCCAGCCAGCTATGCCAAGTCCCTATCAGCATTTGCCACTTGCCTCTATTCACATATGAATGAGGAATTTCAGAAGGTTGAAATACCATAA 918 41.07 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQKNESSGTLSNFTGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAIGSNLGSIESTGMQLMNFDAALSDQIEKFKKQEMRGGIADVNGVCKKTNDSLIQICKVEAGEEATINEFNVEKNMINFDLNSKGGYDYSANAAEILDAKVLPCSRVCQATIEEYVINCFTPASYAKSLSAFATCLYSHMNEEFQKVEIP 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2352358 2356712 + ClCG07G002310.1 Cla07g00216 276204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00216 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cla07g00216 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 IPR044848 GO:0003700
Cla07g00216 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 - -
Cla07g00216 305 Gene3D - 17 74 - -
Cla07g00216 305 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cla07g00216 305 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
Cla07g00216 305 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Cla07g00216 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00216 Cla-Chr7:2352358 Cla10g01268 Cla-Chr10:27482619 5.92E-48 dispersed
Cla07g00216 Cla-Chr7:2352358 Cla09g02227 Cla-Chr9:39854007 9.10E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61373 PF00249 Myb_DNA-binding 3.50E-07 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00216 - - csv:101219098 466.848