Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00216 ATGGAGCGAAATTACCCGTATGAGAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTCTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAATATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAAGAATGAAAGCAGTGGGACTCTTAGCAATTTCACCGGTGTAGAGGAAGATGACAGAGGGATGCAAATTGCCGAGGCTCTAAAATCACATGTCGAAGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTCGCCATTGGCAGTAACCTTGGTAGTATTGAAAGCACAGGAATGCAGTTAATGAACTTTGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAGGCATAGCAGACGTAAATGGTGTTTGTAAGAAGACCAATGATTCACTCATCCAGATATGCAAAGTGGAGGCTGGAGAAGAAGCTACAATAAACGAGTTTAATGTTGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGCGGCTATGATTACAGTGCAAATGCGGCTGAAATACTTGACGCCAAAGTACTTCCTTGTTCAAGAGTTTGTCAAGCAACCATTGAAGAATATGTGATAAATTGTTTCACTCCAGCCAGCTATGCCAAGTCCCTATCAGCATTTGCCACTTGCCTCTATTCACATATGAATGAGGAATTTCAGAAGGTTGAAATACCATAA 918 41.07 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQKNESSGTLSNFTGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAIGSNLGSIESTGMQLMNFDAALSDQIEKFKKQEMRGGIADVNGVCKKTNDSLIQICKVEAGEEATINEFNVEKNMINFDLNSKGGYDYSANAAEILDAKVLPCSRVCQATIEEYVINCFTPASYAKSLSAFATCLYSHMNEEFQKVEIP 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2352358 2356712 + ClCG07G002310.1 Cla07g00216 276204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00216 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cla07g00216 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 IPR044848 GO:0003700
Cla07g00216 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 - -
Cla07g00216 305 Gene3D - 17 74 - -
Cla07g00216 305 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cla07g00216 305 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
Cla07g00216 305 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Cla07g00216 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00216 - - - csv:101219098 466.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00216 Cla-Chr7:2352358 Cla10g01268 Cla-Chr10:27482619 5.92E-48 dispersed
Cla07g00216 Cla-Chr7:2352358 Cla09g02227 Cla-Chr9:39854007 9.10E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla05g01126 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 8.3e-45 178.3
Cla09g01095 . 200 404 G2-like Transcription Factor Family AT5G16560 51.7 7.3e-41 165.2
Cla05g01991 CCT 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.6e-40 161.0
Cla08g01528 CCT 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cla05g02327 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.7e-53 204.9
Cla08g00529 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.3e-52 201.4
Cla03g00126 CCT 183 451 G2-like Transcription Factor Family AT3G46640 51.7 3.3e-60 229.2
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.3e-74 275.0
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.2e-69 257.7
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla11g00689 . 2 228 G2-like Transcription Factor Family AT1G69580 56.0 9.4e-50 194.5
Cla09g02227 . 1 389 G2-like Transcription Factor Family AT1G79430 53.4 1.8e-83 306.6
Cla02g01833 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.6e-74 274.6
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.3e-91 333.6
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.4e-82 301.6
Cla04g00590 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.5e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008955 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61373 PF00249 Myb_DNA-binding 3.50E-07 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00216 Cla_Chr07 FPKM 12.029865 15.379023 0.72297 0.921579 0.848762 0.544927 0.504381 4.018053 3.512976 3.771198