Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00231 ATGTTTAATTCCTTATTCTTCTTCTTCTTCATTCTGTTAGTTCACTGTAAATCTTCTGAAATTGCTGGAGGTGGTCGTAGATTGCTTCATCAACCATTTTTCCCACTTGATTCTGTTCCTCCGGCGGAGCCGCCGTCGACTCCGGTACCACCGCCACCGAATCCCAAGTACCCATTTTCCACTACCCCTCCTACTAATCCTGATGGGTCTCCATTTTTTCCGACGTATCCTGGAACCCCACCTCCTCCGGCGCCGGCGAGTTTCGCATCGTTCCCGGCTAATATTTCTTCTCTGATTCTACCTCATTCGTCTCAGTCTGGTTCAGCTTCTAAGAAGGTTGTTCCGTTGGTTGTTGCTGGGGTTGTTTCCGTTGTCTTGGTTGTCTGCATTGCTGGGTTTTTGTACTGGCGGAGACGGCGTGGTCGTGGGTTGGGCGATGACAAGACGTACAGATCCGAAAATAGTAGCCGGTTGTGTCCGGTTCCGAATGTTGAAGTCGGTAATGGAATCCCTAAGTTGAGACATCCCTCTGCTACTAGCTCTGAGTTTCTGTATTTGGGTACTCTTGTGAACTCGAGAGCGATCGATGAGCGTTCCGTTGGGGGAGCTCGTGTTGCTGATCCTAGGTCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGTTGAATTTTGGTCGGTCGAGTGAGAAGCAAAATTGTGGAAATGGAGAGGAGAGATCGATGGGAGATGAGGAGGAAGAGGAATTTTACTCTCCTAAAGGTTCTCTCGGCGCAATTGGTTCGGGATCTCGAAGAGTGCTCGCAACAATGGCGGCTGAAGATTTGCTTGGCAAAACCAGCGATTCGAGCACTACTTCGTATTCCACATCCAGCGGTTCCGTTTCGCCGGCGAGATCACGTTCTAAGAGTCTCTCTCTATCTCCACCGGCGAGTTTGAGCCCAAGAAGATCCGTTCAAAATGAATCTTCTAATTTCTCTGTTTCTGCCACTGTAGCGACGGAGCAAAATTCACCGCCATTGACGCCGCCGCTTTCCCACGCCGGGGTGGAATCAGACGACGGCGTTAAATCCCATTGCCCATCTCCAATGCGTTTATCGACGGATAAAGTTCCGGAGAAAAGCTCCACCGCATCTTCATCCCGGAGGTATTCTAATGTTTCAGTTCACAGTGTGATGTTCCCAATTTCAACAACCGCTAAGGATTTAGTTAATCATGACGATACGAGCAATAATCACGAAGAATCTCCAAGACAATCCCATAATTCAGATCCAGACGAGCCGTTTCCATTTTCTCCTTGTTTATTTCCTCTTTCAGATGGAATTTTAGGGCAAATTCAGATTCAATTGCCCACGGTTTCAAACATTCCCGATTCCGATTCTGAAGCAAAACTTAAGCAACTTCCTTACTCCTTTACTTCATCTTCACCTTCATCGTCGCCGGAGAGAGTAGTTATGGACTCATCTCCGTCAAGAACATCCATTATTTCAGATCAAAACAGGTCTTCTCCACCATCACCAGAGAGAATTGTGTTTAGTGATTCAGATTCATCAAAGAGAACTCTAGACCATTTTGATCAAGATGTGAAATCTTCTTCTGCTGACATCAATACCACTGATGTGGCCCCTCTGCCAGAACGCTGGGAAATGCCTATTTCTCCTTCTACACCAATGGACCAATCCATTCCAAAGGCGCCTCCTCCATTAGTGCCTCCATTAAGGCCATTTATGATGGAGAATGTGAAAAACGTCTCACCAATTCAGTTGCCATCCTGCAAAAGCAATGGCGAATCATCTGAAGACACCCCCAAGCCCAAGTTGAAGCCATTGCATTGGGACAAAGTAAGGGCCAGTTCTGATCGTGAGATGGAGACAACTCCACGCACCGTGCTTCCTCCACCTAACCAAGAGATCGGAGTTCTCGATCCCAAAAAGTCGCAGAACATTGCAATTGCGTTACGGGCGCTTAATGTGACCATAGAAGAAGTTCGTGATGCCCTTTTAGAAGGTAATGCAGATGCACTTGGAGCAGAGCTACTTGAAAGTTTATTGAAGATGGCTCCAACAAAAGAAGAAGAACGTAAACTAAAGGCATCCAAGGATGTATCACCTACAAAGTTTGGCCCTGCTGAGAAATTTTTGAAGGCAGTCCTTGATGTTCCTTTTGCATTTAAAAGGGTGGATGCAATGCTTTACATAGCAAATTTCGAGTCTGAGATTGAGTACCTAAAGAAATCATTCGAAAATCTTGAGACTGCTTGCGAGGAATTGAGGAATAGCAGGATGTTCTTGAAACTTTTGGAAGCTGTGCTCAAGACCGGGAATCGGATGAATGTTGGCACCAACCGCGGTGATGCCCATGCCTTCAAACTTGACACACTTTTGAAGCTTGTTGATGTCAAGGGTGCAGATGGAAAAACCACTCTTCTGCATTTTGTTGTACAAGAAATCATAAGAAGTGAAGGAGCTCGTCTTTGTGTCACGAGTCAAATTCCAAACTCCAACCCGAGTGATGATGCCAAATGCAGGAAACTCGGCCTGCAAGTTGTATCGGGTCTCAGCTCAGAGCTTGCCAACGTAAAGAAGGCAGCTTCAATGGATTCCGATGTGCTCAGTGGCGAGGTCATCAAGCTTTCGAGAGGACTCGACAACATCAGAGAGGCTCTACGTCTAAACGAAGCAGACGGGCCAAACGAAAGCACAGAAAAGTTCTCAGAGTCAATGAGCAGATTCTTGAAAATGGCAGAAGAGGATATCATCAGAGTCCAAGCCCATGAAAGTGTTGCTTTATCTCTAGTAAAGGAGATCACAGAGTACTTCCATGGCAACTCTGCCAAAGAAGAAGCTCATCCATTTAGAATTTTCATGGTGGTAAGAGATTTCCTAACAATTCTTGATGGAGTCTGCAAAGAAGTCGGAATGATAAACGAGCGGACGATTGTAAGTTCTGCCCATAAATTTCCAGTTCCAGTGAATCCAACATTACCACAAGCATTTCAAGCTCTTCATAGAGTGCAGAAATACAATTCTTCTGATGAAGAAAGTGAACAATCCCCATAA 3057 46.03 MFNSLFFFFFILLVHCKSSEIAGGGRRLLHQPFFPLDSVPPAEPPSTPVPPPPNPKYPFSTTPPTNPDGSPFFPTYPGTPPPPAPASFASFPANISSLILPHSSQSGSASKKVVPLVVAGVVSVVLVVCIAGFLYWRRRRGRGLGDDKTYRSENSSRLCPVPNVEVGNGIPKLRHPSATSSEFLYLGTLVNSRAIDERSVGGARVADPRSLDSPELHPLPPLNFGRSSEKQNCGNGEERSMGDEEEEEFYSPKGSLGAIGSGSRRVLATMAAEDLLGKTSDSSTTSYSTSSGSVSPARSRSKSLSLSPPASLSPRRSVQNESSNFSVSATVATEQNSPPLTPPLSHAGVESDDGVKSHCPSPMRLSTDKVPEKSSTASSSRRYSNVSVHSVMFPISTTAKDLVNHDDTSNNHEESPRQSHNSDPDEPFPFSPCLFPLSDGILGQIQIQLPTVSNIPDSDSEAKLKQLPYSFTSSSPSSSPERVVMDSSPSRTSIISDQNRSSPPSPERIVFSDSDSSKRTLDHFDQDVKSSSADINTTDVAPLPERWEMPISPSTPMDQSIPKAPPPLVPPLRPFMMENVKNVSPIQLPSCKSNGESSEDTPKPKLKPLHWDKVRASSDREMETTPRTVLPPPNQEIGVLDPKKSQNIAIALRALNVTIEEVRDALLEGNADALGAELLESLLKMAPTKEEERKLKASKDVSPTKFGPAEKFLKAVLDVPFAFKRVDAMLYIANFESEIEYLKKSFENLETACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRSEGARLCVTSQIPNSNPSDDAKCRKLGLQVVSGLSSELANVKKAASMDSDVLSGEVIKLSRGLDNIREALRLNEADGPNESTEKFSESMSRFLKMAEEDIIRVQAHESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLTILDGVCKEVGMINERTIVSSAHKFPVPVNPTLPQAFQALHRVQKYNSSDEESEQSP 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2572105 2577449 + ClCG07G002460.1 Cla07g00231 276219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00231 1018 Coils Coil 732 759 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 368 383 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 512 529 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 278 383 - -
Cla07g00231 1018 Gene3D Formin, FH2 domain 601 985 IPR042201 -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 402 430 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 198 256 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 469 539 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 405 421 - -
Cla07g00231 1018 PANTHER FORMIN-RELATED 6 622 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla07g00231 1018 MobiDBLite consensus disorder prediction 586 640 - -
Cla07g00231 1018 PANTHER FORMIN-RELATED 623 1016 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla07g00231 1018 MobiDBLite consensus disorder prediction 598 622 - -
Cla07g00231 1018 PANTHER FORMIN-LIKE PROTEIN 1 6 622 - -
Cla07g00231 1018 PANTHER FORMIN-LIKE PROTEIN 1 623 1016 - -
Cla07g00231 1018 Pfam Formin Homology 2 Domain 629 964 IPR015425 -
Cla07g00231 1018 ProSiteProfiles Formin homology-2 (FH2) domain profile. 562 990 IPR015425 -
Cla07g00231 1018 SMART it6_source 596 979 IPR015425 -
Cla07g00231 1018 SUPERFAMILY Formin homology 2 domain (FH2 domain) 635 973 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 40 70 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 469 511 - -
Cla07g00231 1018 MobiDBLite consensus disorder prediction 278 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00231 - - - bhj:120077761 1622.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01189 Cla-Chr2:25442545 Cla07g00231 Cla-Chr7:2572105 6.80E-15 dispersed
Cla07g00231 Cla-Chr7:2572105 Cla11g00087 Cla-Chr11:1122841 6.10E-16 dispersed
Cla07g00225 Cla-Chr7:2464641 Cla07g00231 Cla-Chr7:2572105 1.83E-26 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g00231 . 181 996 FH2 protein (formin) Gene Family AT3G25500 50.1 5.5e-181 632.1
Cla11g00087 . 468 934 FH2 protein (formin) Gene Family AT3G25500 65.8 4.1e-160 562.8
Cla03g01635 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.2e-104 377.1
Cla07g00231 . 588 1013 FH2 protein (formin) Gene Family AT2G43800 56.5 5.6e-126 449.1
Cla02g00812 CCT 441 933 FH2 protein (formin) Gene Family AT5G54650 59.2 4.9e-154 542.3
Cla11g00087 . 481 916 FH2 protein (formin) Gene Family AT5G67470 59.3 3.7e-125 446.4
Cla07g00231 . 580 1013 FH2 protein (formin) Gene Family AT5G67470 55.3 1.4e-121 434.5
Cla03g01635 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.4e-105 378.6
Cla05g02507 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.6e-126 448.7
Cla02g01189 . 730 1033 FH2 protein (formin) Gene Family AT5G48360 52.3 5.7e-74 276.2
Cla07g00225 . 1 1476 FH2 protein (formin) Gene Family AT1G31810 59.8 0.0e+00 1153.7
Cla06g01227 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.5e-241 833.6
Cla06g01570 CCT 1064 1388 FH2 protein (formin) Gene Family AT5G07650 74.2 9.7e-130 461.5
Cla04g01181 CCT 980 1304 FH2 protein (formin) Gene Family AT5G07650 67.4 9.4e-117 418.3
Cla06g01227 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cla05g01683 . 1112 1437 FH2 protein (formin) Gene Family AT5G07650 64.4 1.6e-108 391.0
Cla07g00225 . 1131 1473 FH2 protein (formin) Gene Family AT5G07650 57.7 1.3e-105 381.3
Cla06g01570 CCT 909 1381 FH2 protein (formin) Gene Family AT5G07770 56.8 2.1e-129 459.9
Cla04g01181 CCT 903 1304 FH2 protein (formin) Gene Family AT5G07770 61.0 2.4e-125 446.4
Cla05g01683 . 1036 1429 FH2 protein (formin) Gene Family AT5G07770 59.0 5.4e-117 418.7
Cla06g01227 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.5e-116 415.6
Cla07g00225 . 1067 1467 FH2 protein (formin) Gene Family AT5G07770 53.7 1.0e-112 404.4
Cla05g01683 . 1028 1437 FH2 protein (formin) Gene Family AT3G32400 75.6 5.6e-168 587.8
Cla06g01227 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.9e-148 522.3
Cla07g00225 . 1067 1472 FH2 protein (formin) Gene Family AT3G32400 63.7 3.5e-138 488.8
Cla06g01570 CCT 909 1388 FH2 protein (formin) Gene Family AT3G32400 54.2 5.5e-131 464.9
Cla04g01181 CCT 873 1307 FH2 protein (formin) Gene Family AT3G32400 56.4 5.1e-129 458.4
Cla05g01683 . 1 1437 FH2 protein (formin) Gene Family AT2G25050 50.1 0.0e+00 1137.5
Cla06g01227 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.1e-290 995.7
Cla06g01570 CCT 910 1388 FH2 protein (formin) Gene Family AT5G07780 52.0 2.4e-112 402.9
Cla04g01181 CCT 904 1307 FH2 protein (formin) Gene Family AT5G07780 56.2 1.7e-110 396.7
Cla05g01683 . 1037 1430 FH2 protein (formin) Gene Family AT5G07780 53.8 1.5e-101 367.1
Cla06g01227 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.9e-101 366.7
Cla07g00225 . 1068 1468 FH2 protein (formin) Gene Family AT5G07780 50.6 3.0e-99 359.4
Cla06g01570 CCT 1067 1395 FH2 protein (formin) Gene Family AT5G07760 74.3 9.9e-128 454.9
Cla04g01181 CCT 979 1307 FH2 protein (formin) Gene Family AT5G07760 66.7 2.1e-114 410.6
Cla06g01227 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.5e-110 396.0
Cla05g01683 . 1111 1446 FH2 protein (formin) Gene Family AT5G07760 63.4 8.7e-108 388.7
Cla07g00225 . 1141 1473 FH2 protein (formin) Gene Family AT5G07760 58.1 1.4e-102 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010763 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00231 Cla_Chr07 FPKM 0.0 0.0 0.385482 0.202696 8.205462 10.389863 10.249988 2.200544 2.222803 2.276982