Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00233 ATGACTCTATTTTCATTCTCATTCTTGTTCGTAGTACTTCTTCAGTTATCTTTTCTGTTTAATAGTCTGACTGCCAAAAACGGCGACCACCACCACCACCACCTCCGATCACCAGGACTGAATACGAACCCGAACCCGCGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTCATTTACTCGGACCCAAAAAACCACACTACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTATTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGATCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTAGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCAAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCTGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCACAATTGCAAGTTTCGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCTGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAATTGAATTTAGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTATAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGCTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGAGGTAATGGTTCTAGTATTGCGGCGGTTCCGGCTCCGACGCCAATTTCTTCACCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1218 43.6 MTLFSFSFLFVVLLQLSFLFNSLTAKNGDHHHHHLRSPGLNTNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFEHPCGGGGGNGSSIAAVPAPTPISSPSSFVAPSHL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2591514 2592731 - ClCG07G002475.1 Cla07g00233 276221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00233 405 MobiDBLite consensus disorder prediction 387 405 - -
Cla07g00233 405 Gene3D Ribonuclease Inhibitor 216 339 IPR032675 -
Cla07g00233 405 Gene3D Ribonuclease Inhibitor 51 215 IPR032675 -
Cla07g00233 405 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 403 - -
Cla07g00233 405 PANTHER EXTENSIN-LIKE PROTEIN 13 403 - -
Cla07g00233 405 MobiDBLite consensus disorder prediction 385 405 - -
Cla07g00233 405 SUPERFAMILY L domain-like 51 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00233 - - - csv:101218757 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01020 Cla-Chr6:21872214 Cla07g00233 Cla-Chr7:2591514 3.16E-118 dispersed
Cla07g00233 Cla-Chr7:2591514 Cla11g00179 Cla-Chr11:2134236 8.54E-92 dispersed
Cla07g00233 Cla-Chr7:2591514 Cla11g00230 Cla-Chr11:2662401 3.64E-134 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g00515 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 3.7e-49 193.7
Cla11g00230 CCT 153 498 Leucine-rich Repeat extension Gene Families AT1G62440 63.5 1.6e-47 188.3
Cla07g00233 . 27 374 Leucine-rich Repeat extension Gene Families AT1G62440 56.7 4.7e-44 176.8
Cla05g01996 . 67 263 Leucine-rich Repeat extension Gene Families AT1G62440 60.4 1.7e-41 168.3
Cla06g01020 CCT 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 8.4e-41 166.0
Cla11g00230 CCT 118 502 Leucine-rich Repeat extension Gene Families AT4G13340 75.9 1.8e-72 271.2
Cla06g01020 CCT 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.3 1.5e-66 251.5
Cla05g00515 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.6 5.2e-56 216.5
Cla05g01996 . 67 257 Leucine-rich Repeat extension Gene Families AT4G13340 67.0 4.6e-44 176.8
Cla07g00233 . 38 375 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 1.0e-43 175.6
Cla06g00331 . 18 221 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 2.6e-39 161.0
Cla11g00230 CCT 118 500 Leucine-rich Repeat extension Gene Families AT3G24480 74.5 1.2e-77 287.7
Cla06g01020 CCT 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 8.9e-73 271.6
Cla05g00515 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 1.9e-54 210.7
Cla07g00233 . 45 396 Leucine-rich Repeat extension Gene Families AT3G24480 58.5 2.7e-45 180.3
Cla05g01996 . 67 257 Leucine-rich Repeat extension Gene Families AT3G24480 65.4 3.5e-45 179.9
Cla06g00331 . 21 395 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 2.6e-40 163.7
Cla05g00515 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.7 7.2e-72 268.5
Cla07g00233 . 45 374 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 2.0e-50 197.2
Cla11g00230 CCT 165 498 Leucine-rich Repeat extension Gene Families AT3G22800 64.0 1.7e-41 167.5
Cla06g01020 CCT 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.8e-38 155.2
Cla06g01020 CCT 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 3.0e-40 163.3
Cla11g00230 CCT 139 498 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 7.4e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00233 Cla_Chr07 FPKM 13.963326 16.139284 26.210449 27.664064 20.033497 18.127344 23.127388 20.483625 19.01527 19.796881