Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g00237 | ATGACCACCGGAAGGGAAATTCTCCACAAGATGAAGGTGAAGGCAGGGTTTTGTTCATCAGCAGCAGCTGATACAGGGAAAGGCAAAGGCAAATTGACGACAAATAATAATAATAATAATAATAAGAATATAAGCCATGGGAGTTATTTGGTGAAGGGAAAAGGCAACCATCCAATGGAAGATTACTTGGTTTCCGATTTCAAGCGAGTCAAAGAACATGATTTGGGTTTGTTTGCCATTTTCGATGGCCATTTGGGCCACGATGTTGCTAATTTCTTGCAAAATAATCTCTTTCATAACATCCTCAAAGAGGCTGATTTCTGGGGCGAAACAAGAAAAGCCATAAAAAGAGCTTACAAGAAAACAGACGAAGAAATATTGGATAAAGTGAAGCAACTTGGAAAAGGAGGATCAACGGCCGTAACCGCGATCTTGATCGACGGCCACAAACTTGTGGTTGCCAACGTCGGAGATTCTAGAGCTGTTTTGTGCAGAAACGGCGTCGCCGAGCAACTTTCCGTTGACCACGAACCCACCAAAGAGAAAAGAGAAATTGAAAGCCGTGGTGGTTTTGTATCAAATATTCCAGGAGATGTTCCACGTGTCGACGGACAATTGGCGGTGGCCAGAGCATTTGGAGATAAGAGTTTAAAAGTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACGGTGGACGAAACTACAGAGTTCATGATTTTGGCTAGCGATGGCATATGGAAGGTGATGACAAACCAAGAAGCAGTAGAATCAATTAGACATATAAAGGATGCGAACATAGCGGCCAGACGACTTATCGACGAAGCAGTGTCTAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCGATGA | 882 | 43.31 | MTTGREILHKMKVKAGFCSSAAADTGKGKGKLTTNNNNNNNKNISHGSYLVKGKGNHPMEDYLVSDFKRVKEHDLGLFAIFDGHLGHDVANFLQNNLFHNILKEADFWGETRKAIKRAYKKTDEEILDKVKQLGKGGSTAVTAILIDGHKLVVANVGDSRAVLCRNGVAEQLSVDHEPTKEKREIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKVHLSSEPDVEVKTVDETTEFMILASDGIWKVMTNQEAVESIRHIKDANIAARRLIDEAVSRKSKDDISCIVVRFR | 293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2622852 | 2626161 | + | ClCG07G002520.1 | Cla07g00237 | 276225 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g00237 | 293 | MobiDBLite | consensus disorder prediction | 24 | 45 | - | - | |
| Cla07g00237 | 293 | SMART | PP2C_SIG_2 | 50 | 292 | IPR001932 | - | |
| Cla07g00237 | 293 | Pfam | Protein phosphatase 2C | 57 | 285 | IPR001932 | - | |
| Cla07g00237 | 293 | MobiDBLite | consensus disorder prediction | 29 | 45 | - | - | |
| Cla07g00237 | 293 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 3 | 292 | - | - | |
| Cla07g00237 | 293 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 292 | IPR015655 | GO:0004722|GO:0006470 | |
| Cla07g00237 | 293 | ProSiteProfiles | PPM-type phosphatase domain profile. | 45 | 292 | IPR001932 | - | |
| Cla07g00237 | 293 | CDD | PP2Cc | 44 | 292 | IPR001932 | - | |
| Cla07g00237 | 293 | SMART | PP2C_4 | 40 | 290 | IPR001932 | - | |
| Cla07g00237 | 293 | Gene3D | - | 27 | 293 | IPR036457 | - | |
| Cla07g00237 | 293 | SUPERFAMILY | PP2C-like | 38 | 292 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00237 | Cla-Chr7:2622852 | Cla10g00886 | Cla-Chr10:20318599 | 1.70E-107 | dispersed | |
| Cla01g02461 | Cla-Chr1:38303798 | Cla07g00237 | Cla-Chr7:2622852 | 1.55E-109 | transposed | |
| Cla03g00058 | Cla-Chr3:625743 | Cla07g00237 | Cla-Chr7:2622852 | 4.22E-46 | transposed | |
| Cla05g00953 | Cla-Chr5:9494823 | Cla07g00237 | Cla-Chr7:2622852 | 5.00E-51 | transposed | |
| Cla05g02028 | Cla-Chr5:32011675 | Cla07g00237 | Cla-Chr7:2622852 | 1.31E-18 | transposed | |
| Cla05g02282 | Cla-Chr5:34442186 | Cla07g00237 | Cla-Chr7:2622852 | 2.16E-22 | transposed | |
| Cla06g00676 | Cla-Chr6:8579939 | Cla07g00237 | Cla-Chr7:2622852 | 1.01E-36 | transposed | |
| Cla08g00652 | Cla-Chr8:18724501 | Cla07g00237 | Cla-Chr7:2622852 | 9.08E-56 | transposed | |
| Cla11g01380 | Cla-Chr11:27341263 | Cla07g00237 | Cla-Chr7:2622852 | 6.47E-115 | transposed | |
| Cla05g01655 | Cla-Chr5:28135087 | Cla07g00237 | Cla-Chr7:2622852 | 4.86E-63 | transposed | |
| Cla11g01750 | Cla-Chr11:31111961 | Cla07g00237 | Cla-Chr7:2622852 | 2.59E-133 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g00237 | K17506 | - | csv:101211399 | 501.516 |