Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00238 ATGAGCAGCGTTTGTGCGGAGCAACAGAAATTTCAATTTCAATTTCAATTTCCGTCTTCAGCTTCTGCTGCTTCTTCTTCGTGTTCTTCGTGGTTTCTTAAAGATATTAACGTTCCGCCGAGGAAGCTTGTCGCTGCGGTGAGACGAGAAAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTTAATGGCGAGGATGAAGCGGAGGAGGATGGAGATCCGTATTCGTCAGACCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCAGGAGAGAAGGCACGGAGGCGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCCGCGAGGTATCGTACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCACCGAATAAGAGAAATTCTGGTCTTAGATCGGCCACTTCCGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCAACGCTTTTCGGAATGTCTCATCTGTCTCCGCCACACTCTCCGCCGCTCTCGCCGGGAAAACCTCGGTCATCGATTAATGGATTTTCACCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTGATGAGCTCAATTGAATCCATGAATATCGACGACGCCAATGCCACTTTAGCCGCCGCCGCCACCGCCACTCCAAGACAGACGATTCCTTGGATCGATGTTTCATCTCTCAACTCTGAAGATCAACTGCAGTTTGATCTCTCACCTTCTACTCCAAACGTGTCCGTCGAGAACAAAGGTAACCCCGACAATGGATGGGCCTCCTCCTCCGATCCGGATCTTAGATGGGTTAATGATCTGCTGATGTAA 1137 48.11 MSSVCAEQQKFQFQFQFPSSASAASSSCSSWFLKDINVPPRKLVAAVRRENGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRNSGLRSATSGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSSINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAATATPRQTIPWIDVSSLNSEDQLQFDLSPSTPNVSVENKGNPDNGWASSSDPDLRWVNDLLM 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2631716 2632852 + ClCG07G002530.1 Cla07g00238 276226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00238 378 MobiDBLite consensus disorder prediction 344 364 - -
Cla07g00238 378 SMART c3hfinal6 132 158 IPR000571 GO:0046872
Cla07g00238 378 SMART c3hfinal6 167 190 IPR000571 GO:0046872
Cla07g00238 378 ProSiteProfiles Zinc finger C3H1-type profile. 133 159 IPR000571 GO:0046872
Cla07g00238 378 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 35 377 - -
Cla07g00238 378 PANTHER UNKEMPT FAMILY MEMBER 35 377 IPR045234 -
Cla07g00238 378 Gene3D - 132 195 - -
Cla07g00238 378 MobiDBLite consensus disorder prediction 344 366 - -
Cla07g00238 378 MobiDBLite consensus disorder prediction 262 277 - -
Cla07g00238 378 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00238 Cla-Chr7:2631716 Cla10g01629 Cla-Chr10:31945774 2.03E-57 dispersed
Cla07g00238 Cla-Chr7:2631716 Cla03g01526 Cla-Chr3:30903917 1.82E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61376 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00238 K23047 - csv:101211149 592.808