Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00244 ATGATTTCGAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGATTTCCGCGAGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAGGCTTACAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTACCTTTAAGAGCAAAGCGAAGGGAGGATGATAATACGTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCCGAAGATATGGAGGTTCTTTACGTTGGTTCGCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTCGACCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTGAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGTAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTTGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACGAGGGAACTCACACAACAATTTGCAGGGAAAACGGTGTTGCTTGGTGTCGACGATTTGGACATTTTCAAAGGCATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCGAAGTGGCAGGGAAAGGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATCTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTTCCAAAAATGTTTAAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGATGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTAGAGCTGAAAGTCGGGCTATTCTGTTGGACTATGATGGCACTGTGATGCCTCAAAACTCCATAAATAAGTCACCGAGTGAGCAGGTTATCTCTATCCTTAACATCCTTTGTGCAGATGCAAAAAATGTTGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGTTTGCTTCTGTGATCTCTGTCATGTTTTTATATCCTCTCCTTTACGTTAATGGTGGTATAATTATATCATCAACTCTATTCAAAATGGCCAGGCAGTCGCAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAAATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTAGCAGTCAAAAGTGGCCAGTTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGGCTAGTGGCTGAAAAGATCTTTTCATCAATGGTGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAATATTCTTTCTCCAACGACATCGGTTTTTGCCTGCACTGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTAGATGACACAGCTGAAGTAATAAGTATGCTTGAATACCTGGCTGAAGCGTCTAGCCCATTGCCATCCTCGGACGATGAAGAAGGTGAAAATGCTTCTTGA 2664 42.12 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNTWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFRCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSWIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTFQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNILCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRFASVISVMFLYPLLYVNGGIIISSTLFKMARQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMVEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2689452 2693269 - ClCG07G002600.1 Cla07g00244 276232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00244 887 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 690 881 - -
Cla07g00244 887 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cla07g00244 887 Gene3D - 589 678 IPR023214 -
Cla07g00244 887 Pfam Trehalose-phosphatase 593 858 IPR003337 GO:0003824|GO:0005992
Cla07g00244 887 SUPERFAMILY HAD-like 590 869 IPR036412 -
Cla07g00244 887 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Cla07g00244 887 CDD HAD_TPP 591 861 - -
Cla07g00244 887 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 690 881 IPR001830 GO:0003824|GO:0005992
Cla07g00244 887 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 663 IPR001830 GO:0003824|GO:0005992
Cla07g00244 887 Gene3D Glycogen Phosphorylase B; 315 527 - -
Cla07g00244 887 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 663 - -
Cla07g00244 887 Gene3D - 699 855 IPR023214 -
Cla07g00244 887 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Cla07g00244 887 TIGRFAM T6PP: trehalose-phosphatase 698 869 IPR003337 GO:0003824|GO:0005992
Cla07g00244 887 Gene3D Glycogen Phosphorylase B; 53 314 - -
Cla07g00244 887 Gene3D - 704 783 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00244 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101209914 1687.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00244 Cla-Chr7:2689452 Cla10g00141 Cla-Chr10:1490923 0 dispersed
Cla01g02336 Cla-Chr1:37151668 Cla07g00244 Cla-Chr7:2689452 0 wgd
Cla03g00681 Cla-Chr3:8237610 Cla07g00244 Cla-Chr7:2689452 2.23E-134 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00186 . 45 567 Trehalose Biosynthesis Gene Families AT4G24040 57.3 1.2e-178 623.6
Cla07g00244 . 1 872 Trehalose Biosynthesis Gene Families AT1G06410 75.1 0.0e+00 1359.0
Cla01g02336 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1355.5
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1090.5
Cla06g01651 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.7e-303 1038.1
Cla11g01682 . 85 716 Trehalose Biosynthesis Gene Families AT1G16980 64.3 1.2e-245 846.3
Cla03g00681 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.0e-241 833.2
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G23870 75.5 0.0e+00 1341.3
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1210.7
Cla10g00141 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1105.9
Cla07g00244 . 1 873 Trehalose Biosynthesis Gene Families AT1G23870 58.6 0.0e+00 1080.1
Cla05g02526 . 1 846 Trehalose Biosynthesis Gene Families AT1G60140 73.2 0.0e+00 1308.9
Cla06g01651 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1233.8
Cla01g02336 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cla10g00141 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cla07g00244 . 1 876 Trehalose Biosynthesis Gene Families AT1G60140 58.0 6.3e-308 1053.5
Cla10g00141 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.3
Cla07g00244 . 1 875 Trehalose Biosynthesis Gene Families AT1G68020 60.9 0.0e+00 1125.2
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cla06g01651 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1186.4
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cla01g02336 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-293 1005.7
Cla07g00244 . 1 882 Trehalose Biosynthesis Gene Families AT1G70290 55.8 7.6e-287 983.4
Cla10g00141 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 7.1e-285 976.9
Cla11g01682 . 1 962 Trehalose Biosynthesis Gene Families AT1G78580 76.3 0.0e+00 1458.4
Cla03g00681 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1365.1
Cla05g02526 . 33 841 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cla06g01651 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.3e-301 1031.2
Cla01g02336 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.0 1.1e-299 1026.2
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cla07g00244 . 24 872 Trehalose Biosynthesis Gene Families AT2G18700 56.3 8.0e-287 983.4
Cla10g00141 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cla01g02336 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.9
Cla07g00244 . 1 880 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1141.3
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1137.5
Cla06g01651 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cla11g01682 . 93 962 Trehalose Biosynthesis Gene Families AT4G27550 59.9 5.4e-298 1020.4
Cla03g00681 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.6e-288 986.9
Cla11g01682 . 1 962 Trehalose Biosynthesis Gene Families AT1G78580 76.3 0.0e+00 1458.4
Cla03g00681 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1365.1
Cla11g01682 . 85 716 Trehalose Biosynthesis Gene Families AT1G16980 64.3 1.2e-245 846.3
Cla03g00681 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.0e-241 833.2
Cla11g01682 . 83 641 Trehalose Biosynthesis Gene Families AT1G17000 60.1 1.7e-190 663.3
Cla03g00681 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.8e-190 662.5
Cla11g01682 . 93 962 Trehalose Biosynthesis Gene Families AT4G27550 59.9 5.4e-298 1020.4
Cla03g00681 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.6e-288 986.9
Cla10g00141 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cla01g02336 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.9
Cla07g00244 . 1 880 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1141.3
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1137.5
Cla06g01651 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cla10g00141 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.3
Cla07g00244 . 1 875 Trehalose Biosynthesis Gene Families AT1G68020 60.9 0.0e+00 1125.2
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cla06g01651 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cla07g00244 . 1 872 Trehalose Biosynthesis Gene Families AT1G06410 75.1 0.0e+00 1359.0
Cla01g02336 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1355.5
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1090.5
Cla06g01651 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.7e-303 1038.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1186.4
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cla01g02336 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-293 1005.7
Cla07g00244 . 1 882 Trehalose Biosynthesis Gene Families AT1G70290 55.8 7.6e-287 983.4
Cla10g00141 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 7.1e-285 976.9
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G23870 75.5 0.0e+00 1341.3
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1210.7
Cla10g00141 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1105.9
Cla07g00244 . 1 873 Trehalose Biosynthesis Gene Families AT1G23870 58.6 0.0e+00 1080.1
Cla05g02526 . 1 846 Trehalose Biosynthesis Gene Families AT1G60140 73.2 0.0e+00 1308.9
Cla06g01651 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1233.8
Cla01g02336 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cla10g00141 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cla07g00244 . 1 876 Trehalose Biosynthesis Gene Families AT1G60140 58.0 6.3e-308 1053.5
Cla05g02526 . 33 841 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cla06g01651 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.3e-301 1031.2
Cla01g02336 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.0 1.1e-299 1026.2
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cla07g00244 . 24 872 Trehalose Biosynthesis Gene Families AT2G18700 56.3 8.0e-287 983.4
Cla01g00186 . 45 567 Trehalose Biosynthesis Gene Families AT4G24040 57.3 1.2e-178 623.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00244 Cla_Chr07 FPKM 1.123188 1.016663 0.25947 0.0 0.0 0.0 0.999921 1.257526 1.495065 0.953053