Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00244 ATGATTTCGAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGATTTCCGCGAGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAGGCTTACAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTACCTTTAAGAGCAAAGCGAAGGGAGGATGATAATACGTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCCGAAGATATGGAGGTTCTTTACGTTGGTTCGCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTCGACCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTGAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGTAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTTGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACGAGGGAACTCACACAACAATTTGCAGGGAAAACGGTGTTGCTTGGTGTCGACGATTTGGACATTTTCAAAGGCATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCGAAGTGGCAGGGAAAGGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATCTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTTCCAAAAATGTTTAAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGATGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTAGAGCTGAAAGTCGGGCTATTCTGTTGGACTATGATGGCACTGTGATGCCTCAAAACTCCATAAATAAGTCACCGAGTGAGCAGGTTATCTCTATCCTTAACATCCTTTGTGCAGATGCAAAAAATGTTGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGTTTGCTTCTGTGATCTCTGTCATGTTTTTATATCCTCTCCTTTACGTTAATGGTGGTATAATTATATCATCAACTCTATTCAAAATGGCCAGGCAGTCGCAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAAATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTAGCAGTCAAAAGTGGCCAGTTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGGCTAGTGGCTGAAAAGATCTTTTCATCAATGGTGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAATATTCTTTCTCCAACGACATCGGTTTTTGCCTGCACTGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTAGATGACACAGCTGAAGTAATAAGTATGCTTGAATACCTGGCTGAAGCGTCTAGCCCATTGCCATCCTCGGACGATGAAGAAGGTGAAAATGCTTCTTGA 2664 42.12 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNTWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFRCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSWIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTFQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNILCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRFASVISVMFLYPLLYVNGGIIISSTLFKMARQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMVEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2689452 2693269 - ClCG07G002600.1 Cla07g00244 276232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00244 887 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 690 881 - -
Cla07g00244 887 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cla07g00244 887 Gene3D - 589 678 IPR023214 -
Cla07g00244 887 Pfam Trehalose-phosphatase 593 858 IPR003337 GO:0003824|GO:0005992
Cla07g00244 887 SUPERFAMILY HAD-like 590 869 IPR036412 -
Cla07g00244 887 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Cla07g00244 887 CDD HAD_TPP 591 861 - -
Cla07g00244 887 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 690 881 IPR001830 GO:0003824|GO:0005992
Cla07g00244 887 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 663 IPR001830 GO:0003824|GO:0005992
Cla07g00244 887 Gene3D Glycogen Phosphorylase B; 315 527 - -
Cla07g00244 887 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 663 - -
Cla07g00244 887 Gene3D - 699 855 IPR023214 -
Cla07g00244 887 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Cla07g00244 887 TIGRFAM T6PP: trehalose-phosphatase 698 869 IPR003337 GO:0003824|GO:0005992
Cla07g00244 887 Gene3D Glycogen Phosphorylase B; 53 314 - -
Cla07g00244 887 Gene3D - 704 783 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00244 Cla-Chr7:2689452 Cla10g00141 Cla-Chr10:1490923 0 dispersed
Cla01g02336 Cla-Chr1:37151668 Cla07g00244 Cla-Chr7:2689452 0 wgd
Cla03g00681 Cla-Chr3:8237610 Cla07g00244 Cla-Chr7:2689452 2.23E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00244 K16055 - csv:101209914 1687.93