Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00246 ATGGACCGCCGTGTTCGTACAAACCCATTTGTCTCCGAGCAAGAAGATCCTGAAGCCACGTCGGATGACGGCTCACCGGAATCACCCTCCGACGGCAATGACTCAAAATCCGCCTCCGCCGGCCCACCTCCCAAAAAGAGTAGAAGGGGAGTGCAGAAGAGAGTGGTGTCCGTACCGATCGGTGACGTGGAAGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATCCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAAAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAATCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACAATTCCTCCCCATCCTCCGCCGCGATCGCCGCCGCATCCACCGCAGCCGACTCTTCGTCCCCGGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGATAACACGAACGCCGCTCCATCGTCGCCGGCAGCGGCGGCGAAGTTCGAGGAGGCGGCTGCGGTTTTCGCAAGTCAGCCGGAACTGGAACTCGGCGGCGACTCGCTGATGATAAAACCATGCATCGGGGATTTCGGATGGTTGGCTGACGTGGCGTACGACAGAATCCTGGAGGGCCCGATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACTACAGGTGATGACGAGGAGGAGTCGTTATTTGCGGATCTTGGGGAATTACCCGAAGGCTCTGTTGTTTTCGGCCGACGACGACCGGTCCAACCGGACGGACCAAACCGGACATGTGGCAGAGTTTTAGACTGCTAG 903 57.48 MDRRVRTNPFVSEQEDPEATSDDGSPESPSDGNDSKSASAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDPWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHNSSPSSAAIAAASTAADSSSPGSTTTSSSTSSGDNTNAAPSSPAAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRILEGPICGGGDIFDDADVMVLSTTGDDEEESLFADLGELPEGSVVFGRRRPVQPDGPNRTCGRVLDC 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2705874 2708710 - ClCG07G002620.1 Cla07g00246 276234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00246 300 MobiDBLite consensus disorder prediction 137 189 - -
Cla07g00246 300 MobiDBLite consensus disorder prediction 1 115 - -
Cla07g00246 300 MobiDBLite consensus disorder prediction 23 37 - -
Cla07g00246 300 Pfam WRKY DNA -binding domain 77 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla07g00246 300 MobiDBLite consensus disorder prediction 147 187 - -
Cla07g00246 300 PANTHER OS01G0750100 PROTEIN 19 283 - -
Cla07g00246 300 SMART WRKY_cls 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla07g00246 300 SUPERFAMILY WRKY DNA-binding domain 71 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla07g00246 300 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 19 283 IPR044810 GO:0003700
Cla07g00246 300 Gene3D WRKY domain 63 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla07g00246 300 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00246 Cla-Chr7:2705874 Cla05g00141 Cla-Chr5:1297484 7.21E-28 dispersed
Cla10g01093 Cla-Chr10:25148545 Cla07g00246 Cla-Chr7:2705874 1.69E-31 dispersed
Cla03g00699 Cla-Chr3:8466093 Cla07g00246 Cla-Chr7:2705874 2.35E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61378 PF03106 WRKY 2.10E-24 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00246 - - csv:101209422 461.84