Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00282 ATGCAGCTGAATGTGATAATGTTGGTGAATTTAGTAGTGATGGCCATGGGGAAGTTTCTTGTGGTTGAATCAGCTCGGCTTCCAAACCGTACGTCAGCTTCCCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGCCCTGAAGGCGACGGCAGCGACGGTGGGGCATGTGGCTACGGTAGTTTGGTGGACGTGAAGCCGTTCAAAGCGAGAGTAGGGGCCGTGAGTCCAATCCTATTCAAGGACGGGGAAGGGTGCGGCGCGTGCTACAAGGTCCGGTGCTTGGACCGAGCCATATGTGCCAAACGGGCTGTTACCATAATAGTGACCGACGAGTGTCCGGGTGGATACTGTGCCAGTGGCCGCACCCACTTCGACTTGAGTGGCGCCGCCTTCGGACGCATGGCAGTGGCAGGTGCGGGCAGCCGTCTTCGGGACCGAGGCGAATTGACCGTCATGTACAGACGGACACCGTGTAAATATCGAGGAAAGAATATAGCGTTTCATGTGAATGAAGGTTCTACGGATCATTGGCTTTCACTTTTGGTGGAGTTCGAGGATGGAGATGGTGATATTGGTTCTATGCAAATCAAACAA 597 54.94 MQLNVIMLVNLVVMAMGKFLVVESARLPNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICAKRAVTIIVTDECPGGYCASGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVMYRRTPCKYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQ 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3097409 3100456 + ClCG07G003010.1 Cla07g00282 276270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00282 199 PANTHER EXPANSIN-B3 14 199 - -
Cla07g00282 199 SMART dpbb_1 72 154 IPR007112 -
Cla07g00282 199 Pfam Lytic transglycolase 74 141 IPR009009 -
Cla07g00282 199 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Cla07g00282 199 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Cla07g00282 199 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Cla07g00282 199 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Cla07g00282 199 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576|GO:0019953
Cla07g00282 199 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 164 IPR007112 -
Cla07g00282 199 PANTHER EXPANSIN-B17 14 199 - -
Cla07g00282 199 Pfam Expansin C-terminal domain 166 199 IPR007117 -
Cla07g00282 199 Gene3D - 21 159 IPR036908 -
Cla07g00282 199 Gene3D - 160 199 IPR036749 -
Cla07g00282 199 SUPERFAMILY Barwin-like endoglucanases 27 163 IPR036908 -
Cla07g00282 199 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Cla07g00282 199 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Cla07g00282 199 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Cla07g00282 199 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cla07g00282 199 SUPERFAMILY PHL pollen allergen 164 199 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00282 Cla-Chr7:3097409 Cla08g01405 Cla-Chr8:26945619 2.06E-25 dispersed
Cla07g00282 Cla-Chr7:3097409 Cla07g00284 Cla-Chr7:3123320 8.63E-149 proximal
Cla02g01720 Cla-Chr2:32085352 Cla07g00282 Cla-Chr7:3097409 3.21E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00282 K20628 - csv:101205324 358.221