Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00284 ATGCAGCTGAATGTGATAATGTTGGTGAATTTAGTAGTGATGGCCATGGGGAAGTTTCTTGTGGTTGAATCAGCTCGGCTTCCAAACCGTACGTCAGCTTCCCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGCCCTGAAGGCGACGGCAGCGACGGTGGGGCATGTGGCTACGGTAGTTTGGTGGACGTGAAGCCGTTCAAAGCGAGAGTAGGGGCCGTGAGTCCAATCCTATTCAAGGACGGGGAAGGGTGCGGCGCGTGCTACAAGGTCCGGTGCTTGGACCGAGCCATATGTGCCAAACGGGCTGTTACCATAATAGTGACCGACGAGTGTCCGGGTGGATACTGTGCCAGTGGCCGCACCCACTTCGACTTGAGTGGCGCCGCCTTCGGACGCATGGCAGTGGCAGGTGCGGGCAGCCGTCTTCGGGACCGAGGCGAATTGACCGTCATGTACAGACGGACACCGTGTAAATATCGAGGAAAGAATATAGCGTTTCATGTGAATGAAGGTTCTACGGATCATTGGCTTTCACTTTTGGTGGAGTTCGAGGATGGAGATGGTGATATTGGTTCTATGCAAATCAAACAAGCAAATTCAAATGAATGGATGGAAATGGCACATGTGTGGGGTGCAACATGGTGCATAAATGGAGGGCCTTTAGAGGGTCCATTTTCAGTGAAGTTAACAACATTATCCACAGCCAAAACTCTGTCAGCAAGAGATGTTATCCCAAGGAATTGGTCTCCAAAGGCAACTTACACTTCTCGTTTGAACTTCTCCTAA 792 51.89 MQLNVIMLVNLVVMAMGKFLVVESARLPNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICAKRAVTIIVTDECPGGYCASGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVMYRRTPCKYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQANSNEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3123320 3127118 + ClCG07G003030.1 Cla07g00284 276272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00284 263 Pfam Lytic transglycolase 74 141 IPR009009 -
Cla07g00284 263 Gene3D - 161 263 IPR036749 -
Cla07g00284 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 164 IPR007112 -
Cla07g00284 263 PANTHER EXPANSIN-B3 19 262 - -
Cla07g00284 263 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Cla07g00284 263 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Cla07g00284 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Cla07g00284 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cla07g00284 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Cla07g00284 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Cla07g00284 263 Gene3D - 21 160 IPR036908 -
Cla07g00284 263 Pfam Expansin C-terminal domain 166 247 IPR007117 -
Cla07g00284 263 SMART dpbb_1 72 154 IPR007112 -
Cla07g00284 263 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576|GO:0019953
Cla07g00284 263 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Cla07g00284 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Cla07g00284 263 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Cla07g00284 263 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Cla07g00284 263 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576|GO:0019953
Cla07g00284 263 PANTHER EXPANSIN-B17 19 262 - -
Cla07g00284 263 SUPERFAMILY Barwin-like endoglucanases 27 163 IPR036908 -
Cla07g00284 263 SUPERFAMILY PHL pollen allergen 164 258 IPR036749 -
Cla07g00284 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 258 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01720 Cla-Chr2:32085352 Cla07g00284 Cla-Chr7:3123320 1.46E-151 dispersed
Cla05g00028 Cla-Chr5:399180 Cla07g00284 Cla-Chr7:3123320 5.02E-80 dispersed
Cla07g00284 Cla-Chr7:3123320 Cla08g01405 Cla-Chr8:26945619 7.09E-38 dispersed
Cla09g01215 Cla-Chr9:15423308 Cla07g00284 Cla-Chr7:3123320 1.73E-29 dispersed
Cla07g00282 Cla-Chr7:3097409 Cla07g00284 Cla-Chr7:3123320 8.63E-149 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00284 K20628 - csv:101205324 479.559