Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00286 ATGGTGGGCTCTGAGGAGGACTCTGGTACTTCTGGGGCTGCGGCGGTGCAGCTCTCTGGCAGTCGGAAAATGTTCTGGCGCTCGGCTTCATGGTCTGCATCACGTTCCTCACTTCACCATCCTGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGTGATAGTAATGGACCAAGCCGAATTTTCCCTGCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATTGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGGTCAGATGATATCGGCGAGTGGCCACAACCTCCTACTCCGAGTGGCAGAGGAAATGGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAATCCAGAAAAGAACTGTGGGCTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAAGTGGCGGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACATAATGGAATTACTCATGTGTTGAATTGTGTAGGATTCGTATGCCCGGAGTACTTCAAAGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTACTTTGAAGATGTTAGGGAAAAAAATGGTAGGGTTTTTGTTCATTGTTGCCAAGGAGTATCACGGTCGACGTCCTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTGAAGGCAGCCAGAGGTATTGCTGACCCGAACATGGGTTTTGCTTGCCAGTTATTGCAGTGCCAAAAGCGGGTCCATGCTTTTCCTCTTAGCCCAAGTTCACTGTTGAGGATGTACAGAATTGCTCCACACTCACCTTATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCGCCCTCAGCTCTGGATTCTAGAGGTGCATTTATCATTCATATACCCTCTGCCATATTTGTTTGGATTGGTAAAAACTGCGAAGCTATCATGGAAAGAGATGCGAGGGGAGCTGTTGTGCAGATTGTTCGGTATGAGAGAGTCCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTATTACCTTTAATGGATAAATCTAACAGTAAAGTTAATCTTGGGGAATTAAAAGTTAAGCCTTATCCAGGGGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATTACTGGTGGTTTCGTACCTCCATTTCCTTCATCTGAAAATGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTGTACTTAGGCGTAAGTTTGCCTCTGGAAATATGAAAGAGTTTGTATCAGCTCCTCGAATATCGCTTTCTAGGGTCTATTCAGACTCGTTGATGATGATGCATTTTTCTGCAAAATCTTCATCACCTTCAGCATTTTCTTTATCGTCATCATCTTCTTCTCCTATCTATCTTTCGCCGGACTCTCTCTCTTCTGATTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAATCTTCTTTAGATTCTCCATCTGCTTCTTCACCTTCAGTTCCAGTTTCCTCATCTCTGTCTAGTTTTTCTAGCATGTCTCTTACCTCATCCAATAGTTCCTCAGAACCTATGCCCAATGGTCCAGAAACTAATGATGCAGTCCCTTTGGAATCAAGTTCTCGCCCATTCTCATTCCCATCTAAAAAGTTCTCACCTTCTCTCGCAGAACGTCGAGGTACTGCAAAATCTCTGACATTGCCTGCAATGCCTAGTAAAATCAAAGCAACAAATAGTGCCTCAAGGTTTCTCGCCACTCAAGAAGATTTAAAGAGGAAAAACAAGACTTCTTACCCTCTTAATGTATCAATTAATATGAAAAATGGCTCAGAGCATATGGATAGGGTTGAAAATGAACAAACAAGTTCCACTCAGAAGTTCAAGAATATTGAAAATGGAATGGACGTAAGGGTAGGTAGTGTGGCCTCGTGCCAGCAGGAAACTAAAGTTGCCGGACAATCTGCTGGTTCCTGGAAAAGCTATCCCAAACTTTTTGGAGAAGGCATGGTATCCAATGTGTCAAATGGAAAGCAAGATGATGAATTTGTGCAACCTATGGTATACTGTTGGCCGGAGTTGGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTATCACAGGTTCATGTAAAGAGGGATAAAGACTTGGTTGATTTAGAACAGATAGACTGGGTTAAAGTTGGTCAATATGTACTTACGGAAATAGGTCTACCAGAAAATACAGAAATTAAGGAGACGCTTGAAAATCCAAGTCGTTTTATAGCAAGTCTTAACAAAGTTGTACAGAGCTGTAACACCCCACCACGTAATTCAAAATTGATCTTGATCATCAAATCTTTCTTCAACTCCTCTTGGGTTCCATTTCTTTCCTCTCAATCTGAACCTATGTTGAAAAAGAAAATGACGTCTGCGAATGGCAAAACTGAAACCCGACAATTGGGTACCGAGGATCACATCGAATCCTGTGTCCTTTCAAAAAAGAAACACGATGTAAGTGCTAAGTGCTTCTCTGCACTCATCCACGGTCCTCAACGATGTGTTTCTTCCCAGGGTCGAATTCTCCCAATATTCTGGTATTCTCAAGGTGAAGCTGACAAGAAATTCATCGACTTCCTCTTCACCATACTTGCCCTTCCTGTTGGAACTGTGATTAGGCTTCTCACCACGCAACCCTTGCTTTGCCCCATCTCTAATCTCTACAGCAGTGTCAATGCCTTAGACAGTAGCTATTTTGAGTCTGACCAAAACAAAAACGACCTCCTCAAGCCCAAATCCTCTGTCACCTCATCTCAAGTCGGAAACCTTTTGCAAATTGAATCTTCATCGATAAAAGCCTATTATCGTTGTTCTTGTAACACTTGCCGAACGTATTTTACCGCTACACGTGGCGCGAGATGTCCTGGATGCAGGCTGGGGATGTTCCACCGTGCAGAATATGTATATGGAGCTAAAGAAGAAAGGCCGACTGAGACAGGATACGTAAAAGAAAATGTGATGTACATGGTGATGGATCATCTTACTCTCAAACCCATGTCCTTCATTTACACCATTTCTGTGTTGAATGCCTTTAATGTTGACGTCGCACAGATTGAGGAAAAGGTTATAGACTTGGACATGACACAGAGTTTAAGGTTGCTAAGGGCTTCTCTGCACTCATCCAATGTGCTCACTGAAACGTTCTATCACAAGTTAGTCTTCACAAGTCAGCATCCAAGAATGTAA 3492 42.44 MVGSEEDSGTSGAAAVQLSGSRKMFWRSASWSASRSSLHHPEVNREGGDPNGNLGDSNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPEKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKVNLGELKVKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSVLRRKFASGNMKEFVSAPRISLSRVYSDSLMMMHFSAKSSSPSAFSLSSSSSSPIYLSPDSLSSDSSSSSSSKYFSESSLDSPSASSPSVPVSSSLSSFSSMSLTSSNSSSEPMPNGPETNDAVPLESSSRPFSFPSKKFSPSLAERRGTAKSLTLPAMPSKIKATNSASRFLATQEDLKRKNKTSYPLNVSINMKNGSEHMDRVENEQTSSTQKFKNIENGMDVRVGSVASCQQETKVAGQSAGSWKSYPKLFGEGMVSNVSNGKQDDEFVQPMVYCWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGSSFDHDLSQVHVKRDKDLVDLEQIDWVKVGQYVLTEIGLPENTEIKETLENPSRFIASLNKVVQSCNTPPRNSKLILIIKSFFNSSWVPFLSSQSEPMLKKKMTSANGKTETRQLGTEDHIESCVLSKKKHDVSAKCFSALIHGPQRCVSSQGRILPIFWYSQGEADKKFIDFLFTILALPVGTVIRLLTTQPLLCPISNLYSSVNALDSSYFESDQNKNDLLKPKSSVTSSQVGNLLQIESSSIKAYYRCSCNTCRTYFTATRGARCPGCRLGMFHRAEYVYGAKEERPTETGYVKENVMYMVMDHLTLKPMSFIYTISVLNAFNVDVAQIEEKVIDLDMTQSLRLLRASLHSSNVLTETFYHKLVFTSQHPRM 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3145477 3159303 + ClCG07G003050.2 Cla07g00286 276274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00286 1163 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Cla07g00286 1163 Gene3D Protein tyrosine phosphatase superfamily 136 295 IPR029021 -
Cla07g00286 1163 MobiDBLite consensus disorder prediction 570 620 - -
Cla07g00286 1163 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Cla07g00286 1163 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Cla07g00286 1163 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Cla07g00286 1163 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 839 - -
Cla07g00286 1163 Pfam Protein of unknown function (DUF674) 953 1153 IPR007750 -
Cla07g00286 1163 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Cla07g00286 1163 MobiDBLite consensus disorder prediction 29 78 - -
Cla07g00286 1163 Gene3D Severin 304 399 IPR029006 -
Cla07g00286 1163 MobiDBLite consensus disorder prediction 570 604 - -
Cla07g00286 1163 PANTHER MKPA PROTEIN 1 839 - -
Cla07g00286 1163 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Cla07g00286 1163 SMART VILL_6 305 399 IPR007122 GO:0051015
Cla07g00286 1163 MobiDBLite consensus disorder prediction 100 120 - -
Cla07g00286 1163 CDD DSP 154 288 - -
Cla07g00286 1163 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00286 - - - csv:101223210 1465.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02597 Cla-Chr5:37222167 Cla07g00286 Cla-Chr7:3145477 5.81E-177 dispersed
Cla06g01782 Cla-Chr6:31232675 Cla07g00286 Cla-Chr7:3145477 1.48E-21 dispersed
Cla07g00286 Cla-Chr7:3145477 Cla09g02029 Cla-Chr9:37875477 1.77E-13 dispersed
Cla07g00286 Cla-Chr7:3145477 Cla07g00287 Cla-Chr7:3164216 8.61E-11 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g229 . . . Bda15g00201 . . . . . . . . . . . . . . . . . . . . Cla07g00286 Cam07g0302 Cec07g0345 Cco07g0305 Clacu07g0294 Cmu07g0351 Cre07g0661 . . . . . . Chy10g00578 . Blo13g00752 . . . . . . Bma08g00972 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00678 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla09g00969 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.2e-122 435.3
Cla06g01782 . 188 1083 Protein tyrosine phosphatase (PTP) family AT5G23720 65.1 0.0e+00 1087.8
Cla09g02029 . 69 234 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 8.7e-71 263.5
Cla05g02189 . 107 419 Protein tyrosine phosphatase (PTP) family AT3G52180 53.7 2.1e-90 329.3
Cla07g00459 . 10 274 Protein tyrosine phosphatase (PTP) family AT3G10940 67.7 2.5e-104 375.6
Cla10g01351 . 143 558 Protein tyrosine phosphatase (PTP) family AT3G01510 68.6 5.8e-180 627.5
Cla02g01771 . 93 296 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 3.8e-75 278.5
Cla09g01043 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.1e-73 272.7
Cla10g00234 . 87 419 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.1e-101 365.5
Cla11g00178 . 17 266 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 4.3e-79 292.0
Cla10g00234 . 123 298 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.2e-43 171.0
Cla02g01771 . 127 296 Protein tyrosine phosphatase (PTP) family AT4G03960 78.2 6.3e-78 287.3
Cla09g01043 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.3e-70 260.8
Cla03g01026 . 13 186 Protein tyrosine phosphatase (PTP) family AT4G03960 56.9 2.0e-55 212.6
Cla03g01026 . 7 212 Protein tyrosine phosphatase (PTP) family AT3G02800 65.5 6.0e-76 280.8
Cla02g01771 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.8e-57 218.0
Cla07g00286 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.7e-63 239.2
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla02g00625 . 8 647 Protein tyrosine phosphatase (PTP) family AT3G19420 61.1 1.5e-215 746.1
Cla01g01668 . 74 649 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.9e-200 694.1
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla02g02139 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.2e-69 258.8
Cla10g00175 . 50 300 Protein tyrosine phosphatase (PTP) family AT2G35320 62.9 2.9e-90 328.9
Cla04g00726 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.4e-286 982.2
Cla04g00726 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cla04g00726 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.1e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004035 1 5 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00286 Cla_Chr07 FPKM 48.700821 53.610435 33.889282 27.541124 22.294188 27.595245 21.52545 47.495449 48.953335 47.946327