Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00303 ATGGCAGATTCTGAGGACATTCAGCCTCTCGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGCCACACAGGCGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGCAATTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAACTTCGTGTTGCTCCCGAGGAGCACCCGGTTCTCCTAACAGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCCCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGCCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATTGCCCTTGATTATGAACAGGAGATGGAAACATCCAAGACTAGCTCGTCCGTTGAAAAGAGCTACGAATTGCCTGACGGACAGGTGATCACCATCGGCGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAGCCCTCCATGATTGGGATGGAAGCAGCAGGGATTCATGAGACTACATACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGACTTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCCCTTGCCCCAAGCAGCATGAAGATAAAGGTCGTGGCACCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAAGCAGAATACGACGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1134 47.35 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3424689 3427468 - ClCG07G003300.1 Cla07g00303 276291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00303 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cla07g00303 377 Gene3D - 140 340 - -
Cla07g00303 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cla07g00303 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cla07g00303 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cla07g00303 377 PANTHER ACTIN 1 376 IPR004000 -
Cla07g00303 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cla07g00303 377 Pfam Actin 5 377 IPR004000 -
Cla07g00303 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cla07g00303 377 PANTHER ACTIN-97 1 376 - -
Cla07g00303 377 SMART actin_3 7 377 IPR004000 -
Cla07g00303 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cla07g00303 377 Gene3D - 10 371 - -
Cla07g00303 377 PRINTS Actin signature 28 37 IPR004000 -
Cla07g00303 377 PRINTS Actin signature 51 62 IPR004000 -
Cla07g00303 377 PRINTS Actin signature 63 85 IPR004000 -
Cla07g00303 377 PRINTS Actin signature 117 130 IPR004000 -
Cla07g00303 377 PRINTS Actin signature 142 161 IPR004000 -
Cla07g00303 377 PRINTS Actin signature 238 254 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00303 K10355 ACTF; actin, other eukaryote - csv:101220611 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02622 Cla-Chr5:37418935 Cla07g00303 Cla-Chr7:3424689 1.99E-68 dispersed
Cla06g01479 Cla-Chr6:28340784 Cla07g00303 Cla-Chr7:3424689 1.99E-45 dispersed
Cla07g00303 Cla-Chr7:3424689 Cla10g01670 Cla-Chr10:32418651 0 dispersed
Cla10g00427 Cla-Chr10:5724757 Cla07g00303 Cla-Chr7:3424689 1.42E-39 dispersed
Cla07g00303 Cla-Chr7:3424689 Cla02g01971 Cla-Chr2:34771151 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g295 Blo04g00108 . . . . . . . Cmo04g00222 Cmo04g01263 Cma04g01189 Cma04g00220 Car04g01093 . . . Cpe01g00187 . . . . . . . Cla07g00303 Cam07g0320 Cec07g0364 Cco07g0325 Clacu07g0312 Cmu07g0369 Cre07g0679 . . . . Lsi03g00412 . Chy10g00547 Cme10g00888 . . . Bda15g00357 . . . . . . Cmo15g00397 . Cma15g00386 . Car15g00367 Cpe01g01096 . . . . . . . . . . . . . . . Lsi04g00880 Csa05g00706 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.9e-215 743.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.9e-214 740.7
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.0e-213 738.4
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.2e-212 734.9
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT2G37620 94.5 6.5e-209 723.4
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.5e-200 693.7
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT2G37620 96.5 4.6e-178 620.9
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 5.2e-214 740.3
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.7e-214 740.0
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.5e-213 738.8
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 9.1e-211 729.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT5G59370 95.5 1.2e-210 729.2
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.5e-197 683.3
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT5G59370 96.2 4.3e-176 614.4
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 3.0e-214 741.1
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.7e-214 740.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.5e-213 738.8
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 4.1e-211 730.7
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT3G46520 95.8 5.3e-211 730.3
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.4e-197 684.5
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G46520 96.5 1.9e-176 615.5
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.6e-215 744.2
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.7e-215 743.8
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.8e-214 741.9
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.7e-213 736.1
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.8e-212 734.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT3G12110 94.7 1.0e-209 726.1
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.1e-199 691.8
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G12110 96.2 2.3e-177 618.6
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.0e-209 723.8
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.9e-208 721.8
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.5e-208 721.5
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.4e-208 719.5
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cla09g01925 . 3 383 Cytoskeleton Gene Families AT3G18780 91.3 6.7e-206 713.4
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.8e-196 680.6
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G18780 92.8 3.4e-173 604.7
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.5e-209 723.4
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.5e-209 723.0
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.2e-208 720.7
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.1e-207 718.4
Cla09g01925 . 2 383 Cytoskeleton Gene Families AT1G49240 91.1 5.2e-206 713.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.7e-196 682.2
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT1G49240 92.8 3.4e-173 604.7
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.5e-217 749.6
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 3.0e-214 741.1
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.7e-214 740.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.3e-213 737.6
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.3e-213 737.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT5G09810 94.2 1.9e-208 721.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.1e-203 704.5
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT5G09810 96.5 1.7e-177 619.0
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 9.0e-57 216.5
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.8e-55 211.1
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT2G19760 73.3 1.9e-54 208.8
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.5e-54 207.2
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT4G29350 71.8 2.1e-53 205.3
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 8.8e-52 199.9
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.6e-64 242.3
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.2e-57 218.0
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT4G29340 73.1 2.5e-54 208.4
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT4G29340 67.9 5.2e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00303 Cla_Chr07 FPKM 0.0 0.0 15.962958 13.28456 0.986178 0.453051 1.046024 0.0 0.0 0.0