Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00313 ATGGCCGCCCTTCCTCTTACTCTTCTCCTCATTCTCCTTTCGCTTCTTGCCGTCGACGCTAGGATCCCTGGAGTTTACTCCGGCGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGTTGAGTACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTTAAGTGCGCTAACGATCCACAGTGGTGCCATTCCGGCAGTCCGTCGATTTTCATCACGGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCAAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTGAGTACAGAGCCGGAATCGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGCAAGCAAGGAGGAATAAGATTCACAATCAACGGTTTCCGCTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCCAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTTGGTCAGTCACTTTCCTTTAGGGTCACAGCCAGTGACCGTCGCACCTCCACTTCCTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGAAAACCTCCCGAGTGGTCATCTTCGGCCGAAATAGTGCCCCAATACCCGGTACTTGTGGCCCGACATCATCGGCTGTCACTCATTCCATGAATGCACTGAAGACATTCTGGGGCATTGGATGTGTCAGATCGTACACCACTCAACTGGGAGTCATATACTTCTTCACCTTCTTCGCATCCAGTGGAGGGCTTTGTCTTGGGTGGAGGAATGTGACGCACCTCAACGTCACGATCCTCGCTGTCAGAGAGTGGCTCGATGATGGGATCATGTATAGCCATTGGAGTAGGCTCGATGGAGGCAATGGTGGCCGACTCGGTAGTGGTGGTGGTGAGATCGATGTCAGTGGTGGACTCGGTCTGTGTGGTGGAATTGGGATGGGCGGTGGTATCAAGATCAGTGGTGGTGGTGAGATTGATGTTAATGGTGGTGGTGTGATCAAGATGGATGGTGGTAGTGGTGTCAAGATTAGTGGTGGTAATGGTCTCGGGATCGGCGATGGTATCGGTATCAATGGTGGTGGTGACATCAATATGACTGGTGGTGGTTTCGAGATGGGAGGTGGTGGTCTTAGAGTTAGGATGGGTGGTAGTGGTCTCGGTATGGGTGGCAACCTCGTGATGAGTAGTGGTATCGAGAATGTCTTACACAAATTCACATATTATAGGAATTTCTTTAAATTAAAAAAAAATTAA 1461 52.02 MAALPLTLLLILLSLLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRKTSRVVIFGRNSAPIPGTCGPTSSAVTHSMNALKTFWGIGCVRSYTTQLGVIYFFTFFASSGGLCLGWRNVTHLNVTILAVREWLDDGIMYSHWSRLDGGNGGRLGSGGGEIDVSGGLGLCGGIGMGGGIKISGGGEIDVNGGGVIKMDGGSGVKISGGNGLGIGDGIGINGGGDINMTGGGFEMGGGGLRVRMGGSGLGMGGNLVMSSGIENVLHKFTYYRNFFKLKKN 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3591610 3595633 - ClCG07G003420.2 Cla07g00313 276301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00313 486 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cla07g00313 486 PANTHER EXPANSIN-A4 8 257 - -
Cla07g00313 486 SMART dpbb_1 66 153 IPR007112 -
Cla07g00313 486 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Cla07g00313 486 Gene3D - 163 255 IPR036749 -
Cla07g00313 486 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cla07g00313 486 Pfam Lytic transglycolase 66 153 IPR009009 -
Cla07g00313 486 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cla07g00313 486 PANTHER EXPANSIN-A15 8 257 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Cla07g00313 486 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Cla07g00313 486 Gene3D - 20 159 IPR036908 -
Cla07g00313 486 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cla07g00313 486 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Cla07g00313 486 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cla07g00313 486 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Cla07g00313 486 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cla07g00313 486 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Cla07g00313 486 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00313 Cla11g00693 CCT
Cla07g00313 Cla11g00693 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00320 Cla-Chr1:3414812 Cla07g00313 Cla-Chr7:3591610 4.55E-88 dispersed
Cla02g00329 Cla-Chr2:3219680 Cla07g00313 Cla-Chr7:3591610 2.53E-87 dispersed
Cla07g00313 Cla-Chr7:3591610 Cla09g01916 Cla-Chr9:36830486 8.71E-126 dispersed
Cla02g01959 Cla-Chr2:34678805 Cla07g00313 Cla-Chr7:3591610 1.41E-161 wgd
Cla03g00138 Cla-Chr3:1443303 Cla07g00313 Cla-Chr7:3591610 1.53E-164 wgd
Cla04g00803 Cla-Chr4:23068149 Cla07g00313 Cla-Chr7:3591610 3.32E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00313 - - csv:101218950 516.153