Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g00320 | ATGTCGTCGATGGCGGCGGCGTCTTCCTACTGGTGTTACCGATGCAGTCGCTTTGTTAGGGTTTCTAATCAGGATTCTGTTGTATGCCCTGATTGTAATAGTGGATTCGTTGAACAGATCCAGCATCCGTCGAGGTTGGTGAACGTGGAAGCGGCTCCACGGAGGAGGTTTCCGGCTGCGGCGATGTATATGATTGGCCACCGCTCGAATTCAGGACAGAATTTGGGATCTGGGCTTCGGAGATCTCGGAGGAATGGAGGGGATCGCTCGCCTTTTAATCCTGTGATTGTTCTTCGTGGGCCATCTGATGGGACTGAAGCTGGAGAAAGTCGTCGGTTTGAGCTTTATTATGATGATGGCGGTGGTTCTGGCCTGAGACCTCTGCCACTGAGTATGTCCGAGTTTTTGTTGGGGTCTGGGTTTGATAGACTTCTGGAGCAACTTTCTCAGATTGAAATGAACGGTATTGGGCGTTGCGAGAACCCGCGGGCGTCGAAGGCTGCGATTGAATCAATGCCCACTTTTAAAATCTGTGAAAATCATTTGGAAATTGAGTCGCATTGTGCCGTTTGCAAAGAAGCATTCGAATTGGAGAGTGAAGCACGGGAGATGCCGTGTAAGCATATTTATCATTCTGATTGTATTCTACCTTGGCTTTCCATTCAAAATTCTTGTCCAGTGTGTCGCCACGAATTGCCGTCAGATAATCAGAACTCTCCGGATGCAGCTCAAGGTGGCGAAAATGGGGAGGAGAATGTGGGGTTAACCATTTGGAGGTTACCCGGCGGGGGGTTTGCAGTAGGGCGGTTTCATGGTGGCAGGAGAGGTGGGGAGAGAGAGCTCCCGGTTGTTTACACTGAGGTGGATGGCGGTTTTACCAATGGTGGCCTTCCTAGAAGGGTATCATTTGCTTCAAGAGGCAGAGGTAGGGAGAGAGGCAGGTGGAGCCGAGTTATTCGTAATATGTTTGCTTGCTTTGGGGGATCAATGAGGTCAATGGCATCTACTTCCAATTCCACCACTGCCACTCATAGTCCTTCAAGGAGTAGTAGACCACTCCCACATTTGAATACCCAGCCAAGGCGACGCCGTACATGGTCTATGGAGGTTAACAGTGGAACAATCACCTGGTAA | 1134 | 50.0 | MSSMAAASSYWCYRCSRFVRVSNQDSVVCPDCNSGFVEQIQHPSRLVNVEAAPRRRFPAAAMYMIGHRSNSGQNLGSGLRRSRRNGGDRSPFNPVIVLRGPSDGTEAGESRRFELYYDDGGGSGLRPLPLSMSEFLLGSGFDRLLEQLSQIEMNGIGRCENPRASKAAIESMPTFKICENHLEIESHCAVCKEAFELESEAREMPCKHIYHSDCILPWLSIQNSCPVCRHELPSDNQNSPDAAQGGENGEENVGLTIWRLPGGGFAVGRFHGGRRGGERELPVVYTEVDGGFTNGGLPRRVSFASRGRGRERGRWSRVIRNMFACFGGSMRSMASTSNSTTATHSPSRSSRPLPHLNTQPRRRRTWSMEVNSGTITW | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3698344 | 3699477 | - | ClCG07G003490.1 | Cla07g00320 | 276308 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g00320 | 377 | Pfam | Protein of unknown function (DUF1117) | 253 | 349 | IPR010543 | - | |
| Cla07g00320 | 377 | Pfam | Ring finger domain | 187 | 229 | IPR001841 | - | |
| Cla07g00320 | 377 | Pfam | zinc-ribbon | 9 | 40 | IPR039525 | GO:0061630 | |
| Cla07g00320 | 377 | MobiDBLite | consensus disorder prediction | 330 | 364 | - | - | |
| Cla07g00320 | 377 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 6 | 324 | - | - | |
| Cla07g00320 | 377 | MobiDBLite | consensus disorder prediction | 72 | 106 | - | - | |
| Cla07g00320 | 377 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN | 6 | 324 | - | - | |
| Cla07g00320 | 377 | CDD | RING-H2_RNF181 | 188 | 232 | - | - | |
| Cla07g00320 | 377 | ProSiteProfiles | Zinc finger RING-type profile. | 188 | 229 | IPR001841 | - | |
| Cla07g00320 | 377 | SMART | ring_2 | 188 | 228 | IPR001841 | - | |
| Cla07g00320 | 377 | SUPERFAMILY | RING/U-box | 168 | 236 | - | - | |
| Cla07g00320 | 377 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 235 | IPR013083 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla07g00320 | Cla11g00648 | CCT | |
| Cla07g00320 | Cla11g00648 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00320 | Cla-Chr7:3698344 | Cla10g01524 | Cla-Chr10:30533282 | 1.02E-39 | dispersed | |
| Cla01g01465 | Cla-Chr1:29194182 | Cla07g00320 | Cla-Chr7:3698344 | 1.30E-41 | transposed | |
| Cla08g00645 | Cla-Chr8:18607939 | Cla07g00320 | Cla-Chr7:3698344 | 1.21E-08 | transposed | |
| Cla09g00333 | Cla-Chr9:3225540 | Cla07g00320 | Cla-Chr7:3698344 | 8.37E-23 | transposed | |
| Cla10g02021 | Cla-Chr10:35997652 | Cla07g00320 | Cla-Chr7:3698344 | 3.19E-107 | wgd | |
| Cla02g01953 | Cla-Chr2:34616714 | Cla07g00320 | Cla-Chr7:3698344 | 2.11E-125 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g00320 | - | K11982 | csv:101218245 | 615.15 |