Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g00324 | ATGACAGGCCTTAACTCTTCTAATTTCTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTACGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACATCTCCCCATTCATATCCGAAGCCACGCTGCCCTTACGGTCGCTTATGAAGCGCTCGAGCGCATGCGAGATCCTACCTATGGTTGCGTTGCGCATATTTTCGCATTGCAGCAAGAGGTTGCGAGCTTGCAAGAGGAGATAGAAATTCTGGGGAGCCAAATAGCAAACTTCACTGCTACCGGTGGGAGCGTTGCGGGGGTTGAGAATCCATTTATAGATCAGCTTCAAGTTTCACAACAGCTGAAAGATTTTGGGATGATGAACAGAGATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATAATGGTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGGGTTTTGCAGCTCAAATGATGTTGTTGAGAGATCAGCCTGTGATGTTTCATTTGAGGAGAGTTTTGTTGGTTATCCATGGGTAGTTGGATGA | 663 | 42.84 | MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDNNGQMISPLFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPWVVG | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3771777 | 3772715 | + | ClCG07G003530.1 | Cla07g00324 | 276312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g00324 | 220 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 33 | 1 | 159 | - | - | |
| Cla07g00324 | 220 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 109 | IPR004883 | - | |
| Cla07g00324 | 220 | ProSiteProfiles | LOB domain profile. | 12 | 114 | IPR004883 | - | |
| Cla07g00324 | 220 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 159 | - | - | |
| Cla07g00324 | 220 | Coils | Coil | 93 | 120 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00324 | Cla-Chr7:3771777 | Cla10g01510 | Cla-Chr10:30343813 | 5.58E-41 | dispersed | |
| Cla07g00324 | Cla-Chr7:3771777 | Cla05g00235 | Cla-Chr5:2110702 | 3.10E-41 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61384 | PF03195 | LOB | 8.90E-33 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g00324 | K13945 | - | csv:101204875 | 375.941 |