Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00380 ATGGAAGGGAAGGAAGAAGATGTAAGACTTGGAGCTAACAAGTTCACCGAGAGACAGCCAATTGGAACGGCGGCGCAGAGTCAAGATGACGGCAAGGACTACAAGGAGCCACCGCCGGCGCCGTTGTTCGAGCCGGAGGAGCTCACTTCATGGTCCTTTTACAGAGCTGGAATTGCAGAGTTTTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGTAAGACCGTCGGGATTCAGGGGATTGCTTGGGCTTTCGGCGGTATGATTTTCGCTCTGGTTTACTGTACTGCTGGAATTTCCGGTGGACACATTAACCCGGCGGTGACTTTCGGGCTGTTTTTGGCGAGAAAGTTGTCGTTGACCAGGGCGATTTTCTACATAGTGATGCAGTGCCTTGGTGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAACCCAAGCCCTACGACAGGCTCGGTGGTGGAGCTAACGTTGTGAACAGTGGATACACCAAAGGAGATGGGCTCGGCGCTGAGATCGTCGGCACATTCATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGTAGTGCCAGAGACTCACATGTTCCGATTTTGGCACCGTTGCCAATTGGGTTTGCAGTGTTCTTAGTTCACTTGGCCACCATTCCGATCACCGGCACCGGCATCAACCCAGCCCGGAGCTTGGGAGCTGCCATTATTTTCAACCACGACAAAGCCTGGGATCATCACTGGATTTTCTGGGTGGGACCATTCATCGGCGCTGCTCTTGCAGCTCTTTACCACCAAGTTGTGATCAGAGCCATCCCTTTCAAGTCCAAGTGA 879 53.81 MEGKEEDVRLGANKFTERQPIGTAAQSQDDGKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLGGGANVVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNHDKAWDHHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4586834 4588804 - ClCG07G004030.1 Cla07g00380 276368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00380 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Cla07g00380 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Cla07g00380 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cla07g00380 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 MobiDBLite consensus disorder prediction 1 39 - -
Cla07g00380 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Cla07g00380 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00380 292 PANTHER AQUAPORIN PIP 1-3 1 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02143 Cla-Chr5:33021643 Cla07g00380 Cla-Chr7:4586834 4.78E-139 dispersed
Cla07g00380 Cla-Chr7:4586834 Cla08g00761 Cla-Chr8:19975775 4.10E-131 dispersed
Cla07g00380 Cla-Chr7:4586834 Cla07g00381 Cla-Chr7:4593508 0 tandem
Cla01g00255 Cla-Chr1:2586172 Cla07g00380 Cla-Chr7:4586834 1.49E-180 transposed
Cla02g01120 Cla-Chr2:23970895 Cla07g00380 Cla-Chr7:4586834 3.28E-21 transposed
Cla10g02079 Cla-Chr10:36478749 Cla07g00380 Cla-Chr7:4586834 8.92E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00380 K09872 - csv:101215145 565.459