Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00381 ATGGAGGGGAAGGAGGAAGATGTCCGACTGGGAGCCAACAAGTTCAACGAGAGGCAGCCCATTGGGACGGCGGCGCAGAGCCAGGACGACGCCAAGGACTACAAGGAGCCACCACCGGCGCCTCTGTTCGAGCCAGACGAGCTCACTTCATGGTCCTTTTACAGAGCTGGAATCGCAGAGTTTTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGGGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGTAAGACCGTCGGGATTCAGGGGATTGCTTGGGCTTTCGGGGGTATGATTTTTGCTCTGGTTTACTGTACTGCTGGAATCTCCGGTGGCCACATTAACCCGGCAGTGACTTTTGGGCTGTTTCTGGCGAGAAAGCTGTCGTTGACCAGGGCGATTTTCTACATAGTGATGCAGTGCCTTGGTGCTATCTGCGGAGCCGGCGTGGTGAAGGGATTCCAACCCAAGCCCTACGAAAGGCTCGGCGGTGGAGCGAATGTTGTGAACAGTGGGTACACCAAAGGAGATGGGCTGGGCGCCGAGATCGTGGGTACTTTCATCCTTGTTTACACCGTCTTCTCCGCCACGGACGCCAAACGCAGCGCCAGAGACTCGCATGTTCCGATTTTGGCACCACTACCAATTGGGTTTGCAGTGTTCTTAGTCCACTTGGCCACCATTCCGATCACCGGCACGGGCATTAACCCAGCCAGGAGTTTGGGAGCAGCCATCATCTTCAACCAGGACAAAGCATGGGACGATCACTGGATATTCTGGGTTGGACCATTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTGGGAAAGGAAGAAGATGTCCGATTGGGAGCCAACAAGTTCAACGAGAGGCAGCCCATTGGGACGGCGGCGCAGAGCCAGGACGACGCCAAGGACTACAAGGAGCCACCACCGGCGCCTCTGTTCGAGCCAGACGAGCTCACTTCATGGTCCTTTTACAGAGCTGGAATCGCAGAGTTTTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGGGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGTAAGACCGTCGGGATTCAGGGGATTGCTTGGGCTTTCGGGGGTATGATTTTTGCTCTGGTTTACTGTACTGCTGGAATCTCCGGTGGCCACATTAACCCGGCAGTGACTTTTGGGCTGTTTCTGGCGAGAAAGCTGTCGTTGACCAGGGCGATTTTCTACATAGTGATGCAGTGCCTTGGTGCTATCTGCGGAGCCGGCGTGGTGAAGGGATTCCAACCCAAGCCCTACGAAAGGCTCGGCGGTGGAGCGAATGTTGTGAACAGTGGGTACACCAAAGGAGATGGGCTGGGCGCCGAGATCGTGGGTACTTTCATCCTTGTTTACACCGTCTTCTCCGCCACGGACGCCAAACGCAGCGCCAGAGACTCGCATGTTCCGATTTTGGCACCACTACCAATTGGGTTTGCAGTGTTCTTAGTCCACTTGGCCACCATTCCGATCACCGGCACGGGCATTAACCCAGCCAGGAGTTTGGGAGCAGCCATCATCTTCAACCAGGACAAAGCATGGGACGATCACTGGATATTCTGGGTTGGACCATTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTGGTGATTAGAGCCATTCCCTTCAAGTCCAAGTGA 1719 54.86 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPDELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNQDKAWDDHWIFWVGPFIGAALAALYHQVGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPDELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNQDKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4593508 4601728 - ClCG07G004040.1 Cla07g00381 276369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00381 572 CDD MIP 335 563 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 Gene3D Glycerol uptake facilitator protein. 40 293 IPR023271 -
Cla07g00381 572 Gene3D Glycerol uptake facilitator protein. 320 571 IPR023271 -
Cla07g00381 572 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 TIGRFAM MIP: MIP family channel proteins 339 560 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 CDD MIP 55 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 SUPERFAMILY Aquaporin-like 327 565 IPR023271 -
Cla07g00381 572 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 282 IPR034294 -
Cla07g00381 572 PANTHER AQUAPORIN PIP1-2-RELATED 284 572 - -
Cla07g00381 572 PANTHER AQUAPORIN PIP1-2-RELATED 1 282 - -
Cla07g00381 572 PRINTS Major intrinsic protein family signature 335 354 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 PRINTS Major intrinsic protein family signature 543 563 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 PRINTS Major intrinsic protein family signature 418 437 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 PRINTS Major intrinsic protein family signature 381 405 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 PRINTS Major intrinsic protein family signature 503 525 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 PRINTS Major intrinsic protein family signature 467 485 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 284 572 IPR034294 -
Cla07g00381 572 Pfam Major intrinsic protein 327 560 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g00381 572 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Cla07g00381 572 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cla07g00381 572 ProSitePatterns MIP family signature. 399 407 IPR022357 -
Cla07g00381 572 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00255 Cla-Chr1:2586172 Cla07g00381 Cla-Chr7:4593508 1.43E-171 dispersed
Cla04g00884 Cla-Chr4:23832679 Cla07g00381 Cla-Chr7:4593508 0 dispersed
Cla07g00381 Cla-Chr7:4593508 Cla10g02079 Cla-Chr10:36478749 9.00E-144 dispersed
Cla07g00380 Cla-Chr7:4586834 Cla07g00381 Cla-Chr7:4593508 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00381 K09872 - csv:101215145 575.859