Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00396 ATGACGAATTTACCCTCTCCGGCCGTCGCCGTCACTGTCCTCACCCTCATCGCCGTCGTTTTCCCGTTGTTCCCGGCGATCCAAGCTCTCGGTTCAGCCTCAACCCTTGCCGTCAGCTACAGCTCCGGAACCGTCTGTGGCATCGTCGCCGAGCAGCCGACCCAAAGGATTTTGTGTTTCCGTGACGGTCAAACCATTTTTATTGAACCCCATATCTCGTTCTCCGCCGTATCCGGCGGCCGGAATACCTTCTGCGGTATAAGGTCCGGCGGTTACACCCTCCTCTGCTGGGACTTCGACTCGACCACCGCTACGTTTTCCCGGAGAAGACTTTACTACAGCCCCACCGTTCTTCTGGAGAATCTCGCGCTCGGCGACGAGCAAATCTGCGCCACGTTGGTTGGCGCCGGCAATGTAACTTGCTGGCGAGAAGGTAACAACGCGAGTGTTGGATTTTCTTCTCTTCAATATGACTCAATCTCTTCTGGGTATGGGTTTTCTTGTGGGATTTTGAAAGGGAGTCAATCCATCCGATGTTGGGGTAGAAATTCGTCGATTGCAACCGTAATCGAAAATGGGTTTCGAAATATTTCAATGTTGAGCATCGTGGCCGGTGGGTTTCATGCCTGTGGATTGAATTCCTCTGGTGGGTTGGTTTGTAAAGGGAATAACGATTTTGGGCAGTTGGATTTTCCTTCAAATACATCCATGGGGTTCTCTGAATTAGCACTCGGTGAACGCCATAGCTGTGGGATTTTAGTCTCGAATGGATCAGTGGTTTGTTGGGGCGGCTTGGGATTTTCTGTTGATCCGATTCGAGAAACTTCTTTTGAGTTAATTTCTTCAGGATCTGATTTTGTTTGTGGTTTAACAACGAGTAATTTTTCTGTTCTTTGTTGGGGGCCTGGTTGGTCCAATGATTCTTTCGGTCTTTCTTCACTCTCTCTTCCCAAGATTCTTCCTGGTCCTTGTGTTCAATCTTCTTGTAGTGATTGTGGGGTTTATCCTTTATCTCAAACCCTCTGTTCTAATTCTGGGAATGTCTGTAATCGCTGTTTGTTTACTGCTTCAACGCCGCCACCGCCTCTGCCATCGTCTCCCCCTCCGCAGCGGTTGCCACCGCCAACGGTGAAGGCCGCGTCACCTCCGCCGGCTGCCTTGAGAAAGGGTTTGTTGGCATTTGGTATTGTGGGCTCAGTTGGTGCCTTTGCTGGGATTTGCACTATTGTTTACTGTTTGTGGACTGGTGCTTGTTTTGGGCATAAGAAGATACATAACTCTGTTCAGCCTACCATCACTAGAGCTGCTAGTTCGAATGGTGGAACGACGACTTCAAATACAAACAACAGCCCTCCGTCTCGGTCGTTGACGATACGACGTCAAGGCTCACGGATAATGCGAAGGCAGAGGAGTGGCACCTCATCTAAGCATGCCGATAGAGCAGAAGAATTCACTCTAGCAGAGCTTGCTATGGCTACCAATGATTTCTCTCCTGAGAACAAGATTGGTGAGGGGAGCTTCGGCGTCGTGTACCGAGGGAAACTGTACGATGGCCGGGAAGTTGCGATTAAGAGAGGCGAAACAGGACCGAAAACTAAGAAGTTTCAGGAGAAAGAGAGTGCTTTTGATTCAGAATTGGCATTCTTGTCTAGGCTTCATCACAAGCATTTGGTTAGGCTTGTTGGGTACTGTGAGGAGAAAGATGAGAGACTGTTGGTTTATGAGTATATGAAAAATGGTGCACTTTATAATCATCTTCATGACAAGAACAATTTTGAGAAAGCCAGCAGTGTTATAAACTCTTGGAAAATGAGGATCAAAATTGCTTTAGATGCAGCTAGAGGGATTGAATATCTTCACAACTATGCAGTCCCTCCCATAATCCATAGAGATATCAAATCATCCAACATACTCCTCGACGCGAATTGGACGGCGAGAGTATCTGACTTCGGGTTGTCATTGATGAGTCCAGGGTCGGACCGTGACTACCAACCAACAAAGGCAGCTGGGACGGTTGGTTACATTGATCCTGAGTACTATGGACTGAATGTTTTGACTGCTAAGAGTGATGTGTATGGGCTTGGGGTGGTGTTGTTGGAGCTTTTGACAGGGAAGAGAGCTATATTTAAGGATGATGAACAAGGAGGGACACCGGTCAGCGTGGTCGATTATGCGGTGCCTGTGATTATGGTTGGAGAATTGGTGAAGATTTTGGATCAGAGAGTTGGGCCACCACAGATGAACGAAGCGGAGGCGGTGGAGCTGGTGGCTTACACAGCGATGCATAGTGTGCATTTGGAAGGGAAAGATCGGCCGACGATGACCGACATTGTTGCTAATTTGGAACGAGCTTTGAATCTTTGTGATGATAGCTATGGTAGCATCTCTAGTGGTGGCATTTCCATTGTTTCAGAGTGA 2418 48.14 MTNLPSPAVAVTVLTLIAVVFPLFPAIQALGSASTLAVSYSSGTVCGIVAEQPTQRILCFRDGQTIFIEPHISFSAVSGGRNTFCGIRSGGYTLLCWDFDSTTATFSRRRLYYSPTVLLENLALGDEQICATLVGAGNVTCWREGNNASVGFSSLQYDSISSGYGFSCGILKGSQSIRCWGRNSSIATVIENGFRNISMLSIVAGGFHACGLNSSGGLVCKGNNDFGQLDFPSNTSMGFSELALGERHSCGILVSNGSVVCWGGLGFSVDPIRETSFELISSGSDFVCGLTTSNFSVLCWGPGWSNDSFGLSSLSLPKILPGPCVQSSCSDCGVYPLSQTLCSNSGNVCNRCLFTASTPPPPLPSSPPPQRLPPPTVKAASPPPAALRKGLLAFGIVGSVGAFAGICTIVYCLWTGACFGHKKIHNSVQPTITRAASSNGGTTTSNTNNSPPSRSLTIRRQGSRIMRRQRSGTSSKHADRAEEFTLAELAMATNDFSPENKIGEGSFGVVYRGKLYDGREVAIKRGETGPKTKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHLHDKNNFEKASSVINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMSPGSDRDYQPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDDEQGGTPVSVVDYAVPVIMVGELVKILDQRVGPPQMNEAEAVELVAYTAMHSVHLEGKDRPTMTDIVANLERALNLCDDSYGSISSGGISIVSE 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4912813 4915230 - ClCG07G004190.1 Cla07g00396 276384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00396 805 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Cla07g00396 805 SUPERFAMILY RCC1/BLIP-II 65 263 IPR009091 -
Cla07g00396 805 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 8 801 - -
Cla07g00396 805 MobiDBLite consensus disorder prediction 435 460 - -
Cla07g00396 805 ProSiteProfiles Protein kinase domain profile. 496 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00396 805 MobiDBLite consensus disorder prediction 360 381 - -
Cla07g00396 805 Pfam Regulator of chromosome condensation (RCC1) repeat 201 228 - -
Cla07g00396 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Cla07g00396 805 Pfam Protein kinase domain 498 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00396 805 SMART serkin_6 496 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00396 805 Gene3D - 76 310 IPR009091 -
Cla07g00396 805 MobiDBLite consensus disorder prediction 435 479 - -
Cla07g00396 805 Gene3D Phosphorylase Kinase; domain 1 458 576 - -
Cla07g00396 805 Gene3D Transferase(Phosphotransferase) domain 1 577 793 - -
Cla07g00396 805 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 8 801 IPR044815 GO:0004674
Cla07g00396 805 SUPERFAMILY Protein kinase-like (PK-like) 477 781 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00069 Cla-Chr3:755723 Cla07g00396 Cla-Chr7:4912813 0 dispersed
Cla07g00396 Cla-Chr7:4912813 Cla08g00253 Cla-Chr8:5230953 2.66E-139 dispersed
Cla07g00396 Cla-Chr7:4912813 Cla04g00632 Cla-Chr4:20628995 1.24E-65 transposed
Cla07g00396 Cla-Chr7:4912813 Cla05g02627 Cla-Chr5:37465029 4.32E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80674 PF00069 Pkinase 1.30E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00396 - - bhj:120081574 1425.61