Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g00398 | ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAACCCGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGGAAGCGCCTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAATCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTCGAAACAGCAATCCGAAGCTACTCGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACGCTCTGTGGGAGCTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTACCATGGGAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGGGGAAGACCGTAG | 726 | 48.35 | MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKSVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCSTKRGRP | 241 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 4960689 | 4974016 | + | ClCG07G004210.2 | Cla07g00398 | 276386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g00398 | 241 | MobiDBLite | consensus disorder prediction | 149 | 169 | - | - | |
| Cla07g00398 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 236 | IPR013083 | - | |
| Cla07g00398 | 241 | ProSitePatterns | Zinc finger PHD-type signature. | 188 | 234 | IPR019786 | - | |
| Cla07g00398 | 241 | PANTHER | CPG BINDING PROTEIN | 1 | 240 | IPR045104 | GO:0006355|GO:0042393 | |
| Cla07g00398 | 241 | SUPERFAMILY | FYVE/PHD zinc finger | 176 | 239 | IPR011011 | - | |
| Cla07g00398 | 241 | MobiDBLite | consensus disorder prediction | 138 | 169 | - | - | |
| Cla07g00398 | 241 | Pfam | PHD-finger | 188 | 236 | IPR019787 | - | |
| Cla07g00398 | 241 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 2 | 1 | 240 | - | - | |
| Cla07g00398 | 241 | CDD | PHD_AL_plant | 187 | 237 | IPR044104 | - | |
| Cla07g00398 | 241 | ProSiteProfiles | Zinc finger PHD-type profile. | 185 | 237 | IPR019787 | - | |
| Cla07g00398 | 241 | SMART | PHD_3 | 187 | 235 | IPR001965 | - | |
| Cla07g00398 | 241 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355|GO:0042393 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g01469 | Cla-Chr3:30202335 | Cla07g00398 | Cla-Chr7:4960689 | 5.23E-23 | dispersed | |
| Cla07g00398 | Cla-Chr7:4960689 | Cla09g00078 | Cla-Chr9:768976 | 1.19E-88 | dispersed | |
| Cla08g00996 | Cla-Chr8:22725908 | Cla07g00398 | Cla-Chr7:4960689 | 1.52E-94 | transposed | |
| Cla10g00714 | Cla-Chr10:11292447 | Cla07g00398 | Cla-Chr7:4960689 | 4.40E-108 | transposed | |
| Cla10g02093 | Cla-Chr10:36624060 | Cla07g00398 | Cla-Chr7:4960689 | 1.02E-139 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61388 | PF12165 | Alfin | 2.10E-67 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g00398 | - | - | csv:101211934 | 498.049 |