Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00403 ATGTCGGAACTGGATATGTGCAGTGGCTCTAAGAATAAAGTTGCTTCCTCGAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGAGGGGGCTTTGTTCTCCGCGAATTCAATCTTGCTTGAACTATCAGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGATTTGGATGTTGATGAGCCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCATTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGTACTTAATTGAGACGGGCAAAGTTGATGTCAACAGGGCTTGTGGTTCAGATTTGACCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTTGTTCTTCCCTTGAGACCATCAAGCTCTTGCTAGATGGATCTGCTGACGTCGATTGTGTCGATGCCTATGGGAGAAAACCTGTCGATTTGATTGTTTCATCTTGCAGGATTGTGCTCAATTCGGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATCTGAGTCTTTACCTTGAAGAAGACCAGCAGAAGATCACAGCCTCCCAATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCGCTGCCTGACATCAACAGCGGGATATACGGTACCGATGATTTCAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCACACGATTGGACCGAGTGCCCTTTTGTTCATCCTGGCGAGAACGCTAGGCGTAGAGACCCCAGGAAGTACCCGTATAGTTGCGTCCCGTGCCCTGAATTCCGGAAGGGGGCTTGCCCAAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGATGAGACTGGCTGCACAAGAAAAGTCTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCTGTGTATGCATCAACAGGCTCAGGCATGCCCTCACCTAGGTCTCTTTCGAGCAGTGCTGCAGATATGTCTACCATGAGCCCGCTTGCTCTTGGTTCATCATCGTTGTCCTTGCCGACTACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCGAAAAATGGGAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGTTCTGCAGCTCCCTGGTAGCCGGTTAAAGGCCACCTTGAGCGCAAGAGATTTGGATTTGGAGATGGAATTGCTCGGGTTAGAAAAGAATGCGAGCCAATTACAACATCAACAACAGTTGATCGACGAGATAGCCCGGCTCTCCTCTCCTTCTTACTGGAGTGCAGATGTAAGCAGGAGTGCAGAGTTGAAGCCAGCAAACCTCGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGCACCTCGCTAAAGACGCCAATCTCAGCTCAAGTTCAATCTCCAACTGGGCTGCATATGCGCCAAAACATCAACCAACTCCGTGCAAGTTACCCAGCTAACCTATCTTCCTCACCTGTAAAGAAACCCACTTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCAGTTATGAACTCAAGGTCTGCTGCCTTTGCTAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGACTCGTCTTCCTGGGTTTACCGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCTGATTGGAACTCGCCTGATGGAAAACTAGACTGGGGAGTGCATGGCAACGATCTCAACAAACTCAAGAAATCTGCTTCGTTTGGGATCCGAAACAACGGCATCGGAACTCCCACATTTGCTCCACCAGTAGAGGAGCCTGATGTCTCTTGGGTCAACTCCTTGGTCAAAGACGTTCCATCGGAAAGCTTCGGGCTGTTCGGTGCCGAGAAGCGTCCATACAGCCTCAAAAGAGAAATCAACGAGACGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2076 48.84 MSELDMCSGSKNKVASSNSAMEARFLKLSEGALFSANSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLLLDGSADVDCVDAYGRKPVDLIVSSCRIVLNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKITASQSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPVLQLPGSRLKATLSARDLDLEMELLGLEKNASQLQHQQQLIDEIARLSSPSYWSADVSRSAELKPANLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSPTGLHMRQNINQLRASYPANLSSSPVKKPTSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGVHGNDLNKLKKSASFGIRNNGIGTPTFAPPVEEPDVSWVNSLVKDVPSESFGLFGAEKRPYSLKREINETLPSWMEQQLYAEQEQIVA 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5224660 5226858 + ClCG07G004270.2 Cla07g00403 276391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00403 691 SMART ANK_2a 82 112 IPR002110 GO:0005515
Cla07g00403 691 SMART ANK_2a 117 149 IPR002110 GO:0005515
Cla07g00403 691 SMART c3hfinal6 275 301 IPR000571 GO:0046872
Cla07g00403 691 SMART c3hfinal6 310 333 IPR000571 GO:0046872
Cla07g00403 691 Gene3D - 35 177 IPR036770 -
Cla07g00403 691 SUPERFAMILY Ankyrin repeat 73 164 IPR036770 -
Cla07g00403 691 MobiDBLite consensus disorder prediction 339 390 - -
Cla07g00403 691 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 300 IPR000571 GO:0046872
Cla07g00403 691 Gene3D - 276 338 - -
Cla07g00403 691 MobiDBLite consensus disorder prediction 345 390 - -
Cla07g00403 691 ProSiteProfiles Ankyrin repeat region circular profile. 82 106 - -
Cla07g00403 691 Pfam Ankyrin repeats (3 copies) 80 149 IPR002110 GO:0005515
Cla07g00403 691 ProSiteProfiles Ankyrin repeat profile. 82 106 IPR002110 GO:0005515
Cla07g00403 691 ProSiteProfiles Zinc finger C3H1-type profile. 275 302 IPR000571 GO:0046872
Cla07g00403 691 ProSiteProfiles Ankyrin repeat profile. 117 152 IPR002110 GO:0005515
Cla07g00403 691 PANTHER UNKEMPT FAMILY MEMBER 25 689 IPR045234 -
Cla07g00403 691 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 25 689 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00403 Cla-Chr7:5224660 Cla10g01629 Cla-Chr10:31945774 3.35E-162 dispersed
Cla02g01906 Cla-Chr2:34204310 Cla07g00403 Cla-Chr7:5224660 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61389 PF12796 Ank_2 2.50E-09 CL0465 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00403 - - csv:101203102 1222.61