Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00409 ATGTTCGCAGTTGCAGTGCCGAAGACGACGATGACTCCGTTATTCTCATCTCCAAAGCTCCCTTCACTACTCTACAAGTCCTCCTCTCTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCATCGCCGAGATCGTTGTCCAGTCCGAGGAATCTTCATGTTTCTGCATCGTCGTCGCCGTCGTCTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCGAGAATCGACGTGCCGCCGAGTATGCCGTCGATTGGATTTGAATTTGGAATATTCGAGACGCCGGAGGTGATGGAGGAGGAAGGAGAAGGATATTCTGTTTATTGTAAAAGAGGAAGAAGACGGATCAGCGCTATAGAGGATCGATTCTCAGCTACCGTCGGAATTCAAGGAGATTCTCGCCAGGCTTTCTTCGGAGTTTTCGACGGACACGGCGGAGCAAAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTAATCGATCAAGTAGCGAGAAGAACAGAGTCGGAACTGGAGGAAGCAATCAAAGACGGCTATCTGACGACGGATCGGGAAGTATCGGAGGAAGGCGTGAGCGGCGGCGGAGCTTGTTGCGTGACTGCATTGATACGGAACGGAAATCTGGCAGTCTCCAACGTTGGCGATTGTCGTGCTGTGTTGAGCAGAAAGGGAAAAGCGGAAGCCCTAACTTCGGATCACAGGGCGTGCAGAGAAGACGAGAGAAATCGGATCGAAAAATCGGGAGGTTATGTAGATTGTTGCGGTGGTGGATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACGAGCATCTGAAACAGTGGGTGATATCGGAGCCGGAGACGAGAGTGATGAAGATCGAGGATGATTGTCATTTCTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTTACAAATCAGGAAGCAGTAGACATAGTAGAGGCAGTATGCGGCGTAGAGATAACGAAGAAGAAACCAAATCCGGCATTAATAATGTCGGCCTGCAAACAGTTGGCGACTTTGTCAACATCAAGAGGCTCAATCGACGATACCACTGTTATGATCATCAAACTAAGTTCCCTTTTTCATTCCTCAACCTCAATTAATCATCATCATTAA 1137 48.46 MFAVAVPKTTMTPLFSSPKLPSLLYKSSSLNSSSSSSSSSSSSPRSLSSPRNLHVSASSSPSSVDTVLKRKRPARIDVPPSMPSIGFEFGIFETPEVMEEEGEGYSVYCKRGRRRISAIEDRFSATVGIQGDSRQAFFGVFDGHGGAKVAEIAAKRMSENVIDQVARRTESELEEAIKDGYLTTDREVSEEGVSGGGACCVTALIRNGNLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDCCGGGWRVQGTLAVSRAIGDEHLKQWVISEPETRVMKIEDDCHFLILASDGLWDKVTNQEAVDIVEAVCGVEITKKKPNPALIMSACKQLATLSTSRGSIDDTTVMIIKLSSLFHSSTSINHHH 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5353131 5355048 + ClCG07G004330.2 Cla07g00409 276397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00409 378 Gene3D - 98 370 IPR036457 -
Cla07g00409 378 Pfam Protein phosphatase 2C 126 355 IPR001932 -
Cla07g00409 378 MobiDBLite consensus disorder prediction 1 20 - -
Cla07g00409 378 CDD PP2Cc 104 364 IPR001932 -
Cla07g00409 378 MobiDBLite consensus disorder prediction 26 75 - -
Cla07g00409 378 SUPERFAMILY PP2C-like 104 365 IPR036457 -
Cla07g00409 378 MobiDBLite consensus disorder prediction 26 66 - -
Cla07g00409 378 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169
Cla07g00409 378 PANTHER PROTEIN PHOSPHATASE 2C 24 366 IPR015655 GO:0004722|GO:0006470
Cla07g00409 378 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 24 366 - -
Cla07g00409 378 SMART PP2C_4 97 362 IPR001932 -
Cla07g00409 378 ProSiteProfiles PPM-type phosphatase domain profile. 104 364 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00058 Cla-Chr3:625743 Cla07g00409 Cla-Chr7:5353131 2.54E-123 dispersed
Cla07g00409 Cla-Chr7:5353131 Cla11g00810 Cla-Chr11:12099219 2.37E-85 dispersed
Cla07g00409 Cla-Chr7:5353131 Cla09g00444 Cla-Chr9:4222654 7.63E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00409 K17506 - csv:101208170 546.584