Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g00427 | ATGGGTGGCAATTCACCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAACTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACAACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCCTCCTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCCCTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA | 501 | 47.9 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDNPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS | 166 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5704730 | 5705669 | + | ClCG07G004530.1 | Cla07g00427 | 276415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g00427 | 166 | Coils | Coil | 85 | 105 | - | - | |
| Cla07g00427 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
| Cla07g00427 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 116 | - | - | |
| Cla07g00427 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 2 | 116 | - | - | |
| Cla07g00427 | 166 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01814 | Cla-Chr2:33227293 | Cla07g00427 | Cla-Chr7:5704730 | 1.62E-59 | dispersed | |
| Cla03g00228 | Cla-Chr3:2736726 | Cla07g00427 | Cla-Chr7:5704730 | 8.27E-47 | dispersed | |
| Cla03g00230 | Cla-Chr3:2765872 | Cla07g00427 | Cla-Chr7:5704730 | 2.48E-49 | dispersed | |
| Cla07g00427 | Cla-Chr7:5704730 | Cla09g02200 | Cla-Chr9:39611639 | 6.44E-54 | dispersed | |
| Cla05g00849 | Cla-Chr5:8387561 | Cla07g00427 | Cla-Chr7:5704730 | 1.20E-40 | transposed | |
| Cla08g01214 | Cla-Chr8:25046183 | Cla07g00427 | Cla-Chr7:5704730 | 1.02E-23 | transposed | |
| Cla02g01885 | Cla-Chr2:34042827 | Cla07g00427 | Cla-Chr7:5704730 | 4.49E-67 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61391 | PF03195 | LOB | 3.70E-42 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g00427 | - | - | csv:101204801 | 318.931 |