Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00427 ATGGGTGGCAATTCACCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAACTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACAACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCCTCCTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCCCTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA 501 47.9 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDNPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 166
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 5704730 5705669 + ClCG07G004530.1 Cla07g00427 276415
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00427 166 Coils Coil 85 105 - -
Cla07g00427 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cla07g00427 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
Cla07g00427 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 116 - -
Cla07g00427 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01814 Cla-Chr2:33227293 Cla07g00427 Cla-Chr7:5704730 1.62E-59 dispersed
Cla03g00228 Cla-Chr3:2736726 Cla07g00427 Cla-Chr7:5704730 8.27E-47 dispersed
Cla03g00230 Cla-Chr3:2765872 Cla07g00427 Cla-Chr7:5704730 2.48E-49 dispersed
Cla07g00427 Cla-Chr7:5704730 Cla09g02200 Cla-Chr9:39611639 6.44E-54 dispersed
Cla05g00849 Cla-Chr5:8387561 Cla07g00427 Cla-Chr7:5704730 1.20E-40 transposed
Cla08g01214 Cla-Chr8:25046183 Cla07g00427 Cla-Chr7:5704730 1.02E-23 transposed
Cla02g01885 Cla-Chr2:34042827 Cla07g00427 Cla-Chr7:5704730 4.49E-67 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61391 PF03195 LOB 3.70E-42 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00427 - - csv:101204801 318.931