Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cla07g00438	ATGGAACGGATTCCGAGGAGCTTTTCAGCACTTTTGGGCTTTAGATTGCTCCGCCTCACAACAGTCATTTCAGGGTCCTCCATTTTTACTGATGATATGATTGGTGTTTTTCAGAAGTGGAGCAGTGAAAAACTGAAAATTAGCTACCATGATGATGACGACGACCTTGCTTTTCGTGTCCTTTTCCAGTTTTTGCTGAATTTTTCATTTGAGGCAATGTGCTGTGGGTCTTGGCAAGCTGTGGAGAAAATAAGAATTAGTAATGGTTCAGTAACCCTTCATTTAGTGAATGATCAATTTATGATTTTGGAAAGAGGCCCCTACTCAGATTTCCGAGTTAGGTCGAGACAGGCAACTTCATCCGACTGCACCTGTTTTCTACGACCTGGTGTTGATGTTTGTATTCTCTCTTCCTCTCACAGCACAGGGAATTTGGACGTGCAAGGTTCAGAGCCTGTGTGGATCGATGCTAAAATAAGCTCAATTGAACGGAGGCCTCATGACGCTGGGTGTTCATGCCAGTTTTATGTCCAACTGTATGCTGATCAAAAACCCCTTGGTTCAGAGAAAGGATCACTCTGTAAAGAAATTATAGAAATGGGAATTGATCAGATATCTATACTTCAAAGGGTTAGAAAGAACTTCTGTGAGGGTCAACACTACCGATGGGATTTCTCTGAGGACTGCTCTCTGTTGCCAAAAACCAAACTACTTTTAGGAAAGTTTCTTTCCGACCTTTCGTGGTTAGTAGTTACATCAGCACTGAAACATGTCACTTTTGATGTTAGATCATTGGATAACAAGATCTTGTATCAAATTTTGGAGAGTAACCAAAAGAGCACATCAGGAGCTTCTGACAAGATTATATATGCTGTAAACTTCAGAGATGATGATGGTATGTTTATTCCAATAATACATCAGCTAGATTCCTCTGATAAGATTGAGATGCCTCCTGCCGAAGATGCATTTGACAATCAACTGCATTCCTTTACTGATCTTATGGACTTGAGGCGTTCAAAACGGCGTAATGTTCAACCTGATCGTTTTCTTGGCTGTGATAACATTGATGAATCAGAAATTGACTACAGTGGAACCAGAGTATATAAAACCGAGCCATTGAATGACGATGAGATGACATTACCACTTGCTTGCCTGTTTGGCACGCCTGCAGGCTCTTCAAAAGTAAAGATTGAAAATGAAAGCAACAACAATTCCAATAAATTGAGTGTACGTGATGACCTCTCTGTTTTCAAGAGCAGAATAAAGTCCTTGGAAATGAAATCAGGAATGAGTGACGATGTAGAAGATAAAAATGAACTTGCTATAGTTCCTTTACTTGATGAACAGCCAATAGCATCAGATCCATACCCCGATAGTGCCAATGGTAGTGGTAATTATACAAAACAGATAACTGAAATGTCAGCCACATATTATTACATAAACAACAAACGGAAAATCCGAAAAAGAAAGTTTTCGGACTATGAAGATGTCGACTTTGAGAATGATAGCTGTAGGGTAAAAGCTTCGAGTAGTAAAGGTAGGAGGACCAGTTATCATTCCATAAGTTATAAAGAGGACGGTCATCCTAAAGAAAGACCGTGGCAGAAAAGGTCCTTAAGTGCAGGTGCATACAAGGATTTGATTAATTCCTTCTTGAAGAATATTGATTCAACAATTAAAAAGGAAGAGCCACAAATAATTGATCAGTGGAAAGAATTTAAGAACAAAAGCTGCTTGGATAAGAGGATCGCAATGGAAATGCCCTCTAATCAGAATGAGGAAGAAAGCTCTGAGATTGAAATGTTGTGGAGAGAAATGGAAATATCCCTTGCCTCTAGTTACCTTATTGAGGCCAACCAGGGTCTCAGTAATGGAACATCACTGGAGCCTGAACAGAAAGCAAGCAAATGGTGCCGGCATGAGTTTAAGTTGAATGAAGAGATTGGGATGCTCTGCCATATATGTGGTTTTGTGAGCACTGAAATTAAAGATGTATCAGCACCATTTATGCAACACATGAGCTGGAGTACAGAAGAGCGGCGGACTGAAGAAAAAGATTCAGAGCACAATACCGATGAAGAGGAGGAGATGAATATTTTCTCTGGCCTTCCTTCTTCTGATGATACCTTATCAGAAGAAAATGACAATGTCTGGGCCTTGATCCCTGAATTCAGAAATAAATTACATCTCCACCAGAAAAAAGCATTTGAGTTCCTGTGGAAAAATGTTGCTGGTTCTATGGTTCCAGCTCTCATGGATCAAGCATCTCGTAAAATAGGTGGTTGTGTGATATCCCATACTCCGGGAGCTGGAAAAACCTTTCTGATCATCTCATTCCTTGTTAGTTACCTGAAACTATTCCCTGGGAAAAGGCCCCTTGTCCTTGCTCCAAAGACGACTCTATATACATGGTACAAGGAATTTATTAAGTGGGAAGTTCCTGTACCGATTCATCTAATACATGGTCGTAGAACCTACCGAGTTTTCCGGGCAAACTCAAAACCAGTGACCTTTGCAGGTCCAAGGCCTACAGATGATGTCATGCACATCTTGGATTGCTTGGAAAAGATAAAAAAGTGGCATGCACATCCAAGTGTTCTTGTTATGGGCTATACATCATTTCTTACATTAATGAGGGAAGATGCAAAGTTTGCACACAGAAAGTACATGGCCAAAGTTTTGCGCCAAAGTCCCGGTATCTTAATATTGGATGAGGGACATAACCCCAGGAGTACCAAGTCCAGGCTGAGGAAAGTTTTGATGAAAGTTGAAACGGACCTCAGAATACTCCTTTCAGGTACATTGTTTCAAAATAATTTCTGTGAATATTTCAATACCCTTTGCTTGGCAAGACCTAAGTTTGTGAATGAAGTGTTGAAGAAACTAGATCCCAAATTCAAGAGAAAGAAAAGAAAAGCTCCACACTTGCAAGAAGCTCGGGCAAGGAAATTCTTTCTAGATAAGATAGCTCGGAAAATCGATGCAGGTGATGAAGAAGACAGGAGGGACGGTCTGAACATGTTAAGAAATATGACAGGTGGGTTTATTGATGTTTATGAAGGTGGCAGTAAGGATGGCCTTCCTGGTTTACAAATTTACACCTTACTAATGAACACAACTGACATACAGCAACAAATTTTGAATAAACTTCACAAGATAATGGCTCAATTCCCTGGGTATCCCCTTGAGTTAGAGCTTCTCATAACTCTTGGTTCCATACATCCTTGGTTAGTAAAAACTGCAGTTTGTGCCAGCAAATTTTTCAGTGATAGGGAACTGATGGAGCTAGATAGATACAAATTTGATTTGAGGAAAGGATCAAAGGTTATGTTTGTTCTGAATCTTGTGTATCGTGTTGTCAAGAAGGAAAAAATTCTGATCTTCTGCCACAACATTGCACCCGTCAAACTATTCATCGAGCTGTTCGAGAACGTGTTTAGGTGGAAGAGAGGCCGAGAAATCTTGGCCCTCACAGGGGACCTTGAGCTGTTTGAACGAGGAAAAGTGATGGATAAGTTTGAAGATCCAGTTGGGCCATCCAAAGTACTTCTTGCTTCAATCACTGCTTGTGCAGAAGGCATTAGTTTGACAGCAGCTTCACGAGTCATCTTATTAGACTCAGAGTGGAATCCTTCAAAAACAAAGCAGGCCATCGCTCGAGCTTTTCGTCCCGGCCAGCTTAAAGTGGTTTATGTCTATCAACTACTAGTAACTGGCACACTGGAAGAAGATAAGTACAAGAGAACTACATGGAAGGAATGGGTGTCAAGTATGATTTTCAGTGAGGCGTTTGTGGAGGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGAGGTTTTGAGGGAGATGGTGGAGGAAGATAGAGTCAAATCGTTTCATATGATTATGAAAAACGAGAAGGCTTCTACTGTGATCAGGGAAAAGGATTAG	3933	40.61	MERIPRSFSALLGFRLLRLTTVISGSSIFTDDMIGVFQKWSSEKLKISYHDDDDDLAFRVLFQFLLNFSFEAMCCGSWQAVEKIRISNGSVTLHLVNDQFMILERGPYSDFRVRSRQATSSDCTCFLRPGVDVCILSSSHSTGNLDVQGSEPVWIDAKISSIERRPHDAGCSCQFYVQLYADQKPLGSEKGSLCKEIIEMGIDQISILQRVRKNFCEGQHYRWDFSEDCSLLPKTKLLLGKFLSDLSWLVVTSALKHVTFDVRSLDNKILYQILESNQKSTSGASDKIIYAVNFRDDDGMFIPIIHQLDSSDKIEMPPAEDAFDNQLHSFTDLMDLRRSKRRNVQPDRFLGCDNIDESEIDYSGTRVYKTEPLNDDEMTLPLACLFGTPAGSSKVKIENESNNNSNKLSVRDDLSVFKSRIKSLEMKSGMSDDVEDKNELAIVPLLDEQPIASDPYPDSANGSGNYTKQITEMSATYYYINNKRKIRKRKFSDYEDVDFENDSCRVKASSSKGRRTSYHSISYKEDGHPKERPWQKRSLSAGAYKDLINSFLKNIDSTIKKEEPQIIDQWKEFKNKSCLDKRIAMEMPSNQNEEESSEIEMLWREMEISLASSYLIEANQGLSNGTSLEPEQKASKWCRHEFKLNEEIGMLCHICGFVSTEIKDVSAPFMQHMSWSTEERRTEEKDSEHNTDEEEEMNIFSGLPSSDDTLSEENDNVWALIPEFRNKLHLHQKKAFEFLWKNVAGSMVPALMDQASRKIGGCVISHTPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRANSKPVTFAGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVNEVLKKLDPKFKRKKRKAPHLQEARARKFFLDKIARKIDAGDEEDRRDGLNMLRNMTGGFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQQILNKLHKIMAQFPGYPLELELLITLGSIHPWLVKTAVCASKFFSDRELMELDRYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPVKLFIELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPVGPSKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKYKRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDEVLREMVEEDRVKSFHMIMKNEKASTVIREKD	1310

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
7	5944276	5951441	-	ClCG07G004630.1	Cla07g00438	276426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cla07g00438	1310	SMART	ultradead3	724	958	IPR014001	-
	Cla07g00438	1310	MobiDBLite	consensus disorder prediction	518	534	-	-
	Cla07g00438	1310	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	69	1304	IPR044567	GO:0080188
	Cla07g00438	1310	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	694	955	IPR027417	-
	Cla07g00438	1310	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2	69	1304	-	-
	Cla07g00438	1310	SMART	helicmild6	1140	1225	IPR001650	-
	Cla07g00438	1310	Pfam	Helicase conserved C-terminal domain	1108	1224	IPR001650	-
	Cla07g00438	1310	Gene3D	-	1081	1300	IPR027417	-
	Cla07g00438	1310	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1112	1296	IPR001650	-
	Cla07g00438	1310	MobiDBLite	consensus disorder prediction	676	696	-	-
	Cla07g00438	1310	MobiDBLite	consensus disorder prediction	674	710	-	-
	Cla07g00438	1310	CDD	DEXHc_ATRX-like	728	992	-	-
	Cla07g00438	1310	Pfam	SNF2-related domain	727	977	IPR000330	GO:0005524\|GO:0140658
	Cla07g00438	1310	MobiDBLite	consensus disorder prediction	505	534	-	-
	Cla07g00438	1310	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1026	1286	IPR027417	-
	Cla07g00438	1310	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	753	953	IPR014001	-
	Cla07g00438	1310	Gene3D	-	704	992	IPR038718	-
	Cla07g00438	1310	CDD	SF2_C_SNF	1107	1236	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cla07g00438	Cla11g00574	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cla07g00438	Cla-Chr7:5944276	Cla09g01200	Cla-Chr9:14964704	8.37E-110	dispersed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	61392	PF00176	SNF2_N	6.90E-17	CL0023	Cla	TR

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cla07g00438	K10875		-	csv:101215377	2272.66