Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00442 ATGGATGAAACTCAAACCCCATTTCATTTTACCTCTTTTTGGAGATACCCATTTGGGGATTCTGGGGTTTTCTTCACTCACTCTCCTGATCGGCTCTGTTTTTCACATAAGAAGAAGGGGAAATGGAAGGTTCTGAGGAAAAACCCTAATGGGTTTGTTTCTGGTGGATTGGGTTTGTGGTTTTTGTTGCTTAATTTGGTTTTTATTCCACCTGTTTTTAGCCAGGATTGGGATGGTGTGGTTGTAACTCAGGCTGATTTTCAATCCCTTCAGGCATTTAAGCAAGAGCTTGATGACCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGAGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCTAAAGGACAGGTTATTGTAATACAGCTTCCTTGGAAGGGATTAGGAGGAAGAATCACTGAGAAGATTGGCCAACTTCAGGCACTTAGGAAGCTCAGTTTACATGACAACTTCATTGGTGGATCAATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAATAATCGATTTTCTGGTTCGATCCCGGCTTCATTGGGACTTTGTCCTTTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACAATCCCACCTACTTTGGCGAACTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTTCGGGTCCGATTCCATCGAGTCTTGCTCGCTCGGTGTCCCTTACTTTCCTTGCTCTTCAACATAACAATCTCTCAGGCAGCATTCCCGACTCTTGGGGGGGCGATGTCACCGAGCGAAACCGGGTGTTTCAGCTCAAGTCTCTGACTCTTGATGGCAATCTCCTCTCAGGTACCATACCAATTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTGGTTTCCCTTAGCCACAATAGGTTAAATGGTGGCATTCCAGAAGAAATTAGTAAGCTTTCTCTGCTGAAAACTCTGGATGTTTCTAATAATTTCCTTAATGGAAGTTTGCCCCAAAGTTTTGATAAATTGAGAAAACTCTCTATTCTCAACTTGAGTAGAAACAGACTCAATGGTGAAATTCCTGCAACTTTAGGGAACATTTCAACTCTTACACAACTTGATTTATCTAAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGATTTGCAAGGTCTTCAATCCTTAAATGTCTCATACAACGACCTTTCGGGTTCAGTTCCTCCCGCTCTCGCTGAAAAATTTGCTGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGATTCGGTGCCCGTCCCCGGCCCCTTCTGAAGAAGCTCCTGCTCCTCCACCAGAAAGTATGACAACCCACCATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTATTGCTCTGCTGCTTGATTAGGAAAAGGGCTGCTACAAAAGGAAAGGATGGTGGTGAGGCTGCAGCAGCTGGGGGTGCTAGGGTCGAGAAGGGTGTCCCTCCGACGAGCAGTGAAGTCGAAGCAGGAGCAGGGGATGCTGGTGGAAAGCTCGTCCATTTCGACGGGCAAACAGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAAATCACTAAGAGCCAAAAGGAATTTGAAGCAGAGGTTAACATACTTGGTAAGATCAGGCATCCAAATTTACTAGCCTTGAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTTTTCGATTACATGCCGAACGGGAGTCTTGCAGCGTTCCTGCACGCTCGTGGACCAGACACATCCATTGATTGGCCGACAAGGATGAAGATAGCTCAGGGTATGACGCGTGGCCTGTGCCATCTTCACACGCACGAGAACAGTATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATTAATGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACTGCAGCTGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTGGGGTACCGAGCACCAGAGCTCTCAAAGCTGAAAAAAGCAAACACGAAAACCGACATTTACAGCCTTGGAGTAATCATACTGGAACTCTTGACTGGTAAATCCCCTGGTGAAGCCATGAACGGAGTCGATTTGCCACAATGGGTTGCATCGATCGTCAAAGAGGAGTGGACTAATGAAGTTTTTGATTTGGAGCTGATGAGGGATGCATCTACAATCGGTGATGAGTTACTAAACACTCTGAAACTTGCTTTGCATTGTGTCGACCCTTCACCGTCAGCGAGACCGGAAGTTCAACAAGTTTTGCAACAACTGGAGGAGATTAGGCCAGAAACTGCTCCAAGTTCTGGGGATGATGGAGCAGGAGGAGGAGGAGCCCCTTCAACAAGTGAGTGA 2550 44.98 MDETQTPFHFTSFWRYPFGDSGVFFTHSPDRLCFSHKKKGKWKVLRKNPNGFVSGGLGLWFLLLNLVFIPPVFSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHISNNLLTGTIPPTLANSTKLYWLNLSFNSFSGPIPSSLARSVSLTFLALQHNNLSGSIPDSWGGDVTERNRVFQLKSLTLDGNLLSGTIPISLSKLSELQVVSLSHNRLNGGIPEEISKLSLLKTLDVSNNFLNGSLPQSFDKLRKLSILNLSRNRLNGEIPATLGNISTLTQLDLSKNNLSGEIPASLADLQGLQSLNVSYNDLSGSVPPALAEKFAASSFVGNIQLCGFSGSIRCPSPAPSEEAPAPPPESMTTHHRKLSTKDIILIAAGALLVVLVIVFFVLLCCLIRKRAATKGKDGGEAAAAGGARVEKGVPPTSSEVEAGAGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGAPSTSE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5996743 5999525 - ClCG07G004670.1 Cla07g00442 276430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00442 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 347 831 - -
Cla07g00442 849 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Cla07g00442 849 MobiDBLite consensus disorder prediction 825 849 - -
Cla07g00442 849 MobiDBLite consensus disorder prediction 505 531 - -
Cla07g00442 849 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Cla07g00442 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 347 831 - -
Cla07g00442 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 22 348 - -
Cla07g00442 849 Gene3D Ribonuclease Inhibitor 82 233 IPR032675 -
Cla07g00442 849 Gene3D Ribonuclease Inhibitor 234 335 IPR032675 -
Cla07g00442 849 CDD STKc_IRAK 561 826 - -
Cla07g00442 849 Gene3D Ribonuclease Inhibitor 336 436 IPR032675 -
Cla07g00442 849 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672|GO:0006468
Cla07g00442 849 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Cla07g00442 849 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515
Cla07g00442 849 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Cla07g00442 849 SUPERFAMILY L domain-like 123 418 - -
Cla07g00442 849 SUPERFAMILY Protein kinase-like (PK-like) 559 827 IPR011009 -
Cla07g00442 849 ProSiteProfiles Protein kinase domain profile. 555 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00442 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 22 348 - -
Cla07g00442 849 Gene3D Transferase(Phosphotransferase) domain 1 633 836 - -
Cla07g00442 849 SMART LRR_typ_2 397 421 IPR003591 -
Cla07g00442 849 SMART LRR_typ_2 150 174 IPR003591 -
Cla07g00442 849 SMART LRR_typ_2 325 348 IPR003591 -
Cla07g00442 849 SMART LRR_typ_2 349 373 IPR003591 -
Cla07g00442 849 SMART LRR_typ_2 301 324 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01355 Cla-Chr3:29012207 Cla07g00442 Cla-Chr7:5996743 4.12E-12 dispersed
Cla07g00016 Cla-Chr7:191105 Cla07g00442 Cla-Chr7:5996743 4.03E-32 dispersed
Cla07g00442 Cla-Chr7:5996743 Cla06g01042 Cla-Chr6:22563430 2.20E-08 dispersed
Cla07g01615 Cla-Chr7:33450889 Cla07g00442 Cla-Chr7:5996743 1.08E-61 dispersed
Cla11g01660 Cla-Chr11:30230282 Cla07g00442 Cla-Chr7:5996743 2.35E-06 dispersed
Cla07g00442 Cla-Chr7:5996743 Cla10g02119 Cla-Chr10:36865747 1.65E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80676 PF07714 PK_Tyr_Ser-Thr 1.50E-40 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00442 - - csv:101214895 1402.5