Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00459 ATGGGAGCTTCTAGCCTCCCTTGTTTTTCATCGCTATTTGCAGTTTTTCCACTTCAAAATAATGCTCACAACAAATCTTTACCATTTTCTTCAAATCTTTCAAAACCTCTTTTCCGATTGAACAGGATTTGCTGCGGAGTCCCTGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGAGTACAATTTGGCCATGAAGAAGATGATGAGGAACCCCTATGAATATCACCATGAACTGGGCATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCCGAAGATATCAATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTCGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAAATTGGAATTCATCATATGAGGCAACCAGCAAAAGATTTTGATCCAGATTCCCTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCGATCTCAGAGGGTAAAGGAAAAGTGTACGTGCATTGCACTGCTGGACTGGGAAGGGCCCCCGCCGTCGCAATAGCTTACCTGTACTGGTTTTGCGGAATGAATGCAACATATGAAGCACTGACCTCTAAAAGACCTTGTGGACCAAATAAAAGAGCGATCCGCGGAGCCACATACGATCTATCTAAAAATGACCCATGGAAGGAGCCATTTGAGAGTCTTCCAGATAATGCATTTGAGGATATTGCAGATTGGGAGAGAAACTTGGTTCGGGATCGGGTTCATTGTCATTCAATTTTTACTAGGATGATGGATTGGAGAACATACAGAATGATGTCATTGGCAATTTGCTTGCTGTTGTTGTCATAG 909 42.46 MGASSLPCFSSLFAVFPLQNNAHNKSLPFSSNLSKPLFRLNRICCGVPESGIQQNPSTSRPSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKEIGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNATYEALTSKRPCGPNKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLVRDRVHCHSIFTRMMDWRTYRMMSLAICLLLLS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6259500 6262423 - ClCG07G004860.1 Cla07g00459 276447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00459 302 CDD DSP_laforin-like 91 236 IPR045204 GO:0019203|GO:0046838
Cla07g00459 302 Gene3D Protein tyrosine phosphatase superfamily 75 278 IPR029021 -
Cla07g00459 302 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 17 276 - -
Cla07g00459 302 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 230 IPR029021 -
Cla07g00459 302 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 253 IPR020422 GO:0006470|GO:0008138
Cla07g00459 302 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 208 IPR000387 GO:0016311|GO:0016791
Cla07g00459 302 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 17 276 - -
Cla07g00459 302 Pfam Dual specificity phosphatase, catalytic domain 115 229 IPR000340 GO:0008138|GO:0016311
Cla07g00459 302 SMART dsp_5 92 240 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02189 Cla-Chr5:33493400 Cla07g00459 Cla-Chr7:6259500 7.05E-26 dispersed
Cla07g00459 Cla-Chr7:6259500 Cla10g01351 Cla-Chr10:28549904 6.75E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00459 - - csv:101219662 538.88