Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00459 ATGGGAGCTTCTAGCCTCCCTTGTTTTTCATCGCTATTTGCAGTTTTTCCACTTCAAAATAATGCTCACAACAAATCTTTACCATTTTCTTCAAATCTTTCAAAACCTCTTTTCCGATTGAACAGGATTTGCTGCGGAGTCCCTGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGAGTACAATTTGGCCATGAAGAAGATGATGAGGAACCCCTATGAATATCACCATGAACTGGGCATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCCGAAGATATCAATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTCGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAAATTGGAATTCATCATATGAGGCAACCAGCAAAAGATTTTGATCCAGATTCCCTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCGATCTCAGAGGGTAAAGGAAAAGTGTACGTGCATTGCACTGCTGGACTGGGAAGGGCCCCCGCCGTCGCAATAGCTTACCTGTACTGGTTTTGCGGAATGAATGCAACATATGAAGCACTGACCTCTAAAAGACCTTGTGGACCAAATAAAAGAGCGATCCGCGGAGCCACATACGATCTATCTAAAAATGACCCATGGAAGGAGCCATTTGAGAGTCTTCCAGATAATGCATTTGAGGATATTGCAGATTGGGAGAGAAACTTGGTTCGGGATCGGGTTCATTGTCATTCAATTTTTACTAGGATGATGGATTGGAGAACATACAGAATGATGTCATTGGCAATTTGCTTGCTGTTGTTGTCATAG 909 42.46 MGASSLPCFSSLFAVFPLQNNAHNKSLPFSSNLSKPLFRLNRICCGVPESGIQQNPSTSRPSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKEIGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNATYEALTSKRPCGPNKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLVRDRVHCHSIFTRMMDWRTYRMMSLAICLLLLS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6259500 6262423 - ClCG07G004860.1 Cla07g00459 276447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00459 302 CDD DSP_laforin-like 91 236 IPR045204 GO:0019203|GO:0046838
Cla07g00459 302 Gene3D Protein tyrosine phosphatase superfamily 75 278 IPR029021 -
Cla07g00459 302 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 17 276 - -
Cla07g00459 302 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 230 IPR029021 -
Cla07g00459 302 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 253 IPR020422 GO:0006470|GO:0008138
Cla07g00459 302 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 208 IPR000387 GO:0016311|GO:0016791
Cla07g00459 302 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 17 276 - -
Cla07g00459 302 Pfam Dual specificity phosphatase, catalytic domain 115 229 IPR000340 GO:0008138|GO:0016311
Cla07g00459 302 SMART dsp_5 92 240 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00459 - - - csv:101219662 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02189 Cla-Chr5:33493400 Cla07g00459 Cla-Chr7:6259500 7.05E-26 dispersed
Cla07g00459 Cla-Chr7:6259500 Cla10g01351 Cla-Chr10:28549904 6.75E-22 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla09g00969 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.2e-122 435.3
Cla06g01782 . 188 1083 Protein tyrosine phosphatase (PTP) family AT5G23720 65.1 0.0e+00 1087.8
Cla09g02029 . 69 234 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 8.7e-71 263.5
Cla05g02189 . 107 419 Protein tyrosine phosphatase (PTP) family AT3G52180 53.7 2.1e-90 329.3
Cla07g00459 . 10 274 Protein tyrosine phosphatase (PTP) family AT3G10940 67.7 2.5e-104 375.6
Cla10g01351 . 143 558 Protein tyrosine phosphatase (PTP) family AT3G01510 68.6 5.8e-180 627.5
Cla02g01771 . 93 296 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 3.8e-75 278.5
Cla09g01043 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.1e-73 272.7
Cla10g00234 . 87 419 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.1e-101 365.5
Cla11g00178 . 17 266 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 4.3e-79 292.0
Cla10g00234 . 123 298 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.2e-43 171.0
Cla02g01771 . 127 296 Protein tyrosine phosphatase (PTP) family AT4G03960 78.2 6.3e-78 287.3
Cla09g01043 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.3e-70 260.8
Cla03g01026 . 13 186 Protein tyrosine phosphatase (PTP) family AT4G03960 56.9 2.0e-55 212.6
Cla03g01026 . 7 212 Protein tyrosine phosphatase (PTP) family AT3G02800 65.5 6.0e-76 280.8
Cla02g01771 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.8e-57 218.0
Cla07g00286 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.7e-63 239.2
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla02g00625 . 8 647 Protein tyrosine phosphatase (PTP) family AT3G19420 61.1 1.5e-215 746.1
Cla01g01668 . 74 649 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.9e-200 694.1
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla02g02139 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.2e-69 258.8
Cla10g00175 . 50 300 Protein tyrosine phosphatase (PTP) family AT2G35320 62.9 2.9e-90 328.9
Cla04g00726 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.4e-286 982.2
Cla04g00726 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cla04g00726 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.1e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012743 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00459 Cla_Chr07 FPKM 17.74502 15.733577 17.921247 17.472435 22.163824 18.69805 21.138102 21.031403 22.128922 22.517321