Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00480 ATGGCCTCTTGCCCAATCCTTCTATATAAATCTCCCCTTTCTCCCCCTAAACCCACAAACCCCTCTTTTCACGACATTTTCAAAATAACCATTCTCATGGCTTTTTACTCACCATTTTCCTCTCTCTTCCTTCTTCCTTTCTTCTTCATCTATTTTCCCTTCGCTTTCGCCGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGCGGTGGTGACGCATCTGGCACTATGGGTGGAGCTTGTGGGTATGGGAACTTGTATAGCCAAGGGTACGGCACAAACACGGTGGCGCTTAGCACAGCGCTATTCAACAACGGGCTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGTCTTCCTGGAACCATTAGAGTCACTGCCACCAACTTCTGCCCTCCTAACTTTGCTCTCCCCAACAACAATGGCGGCTGGTGCAACCCTCCACTCCAACATTTCGACATGGCGGAACCTGCCTTTCTTCAGATCGCACAGTACCGTGCTGGAATCGTCCCTGTCTCCTTTCGTAGAGTACCATGTATGAAAAAAGGTGGAGTGAGGTTCACAATCAATGGTCACTCCTACTTCAACCTTGTTTTGATCACGAACGTGGGCGGCGCAGGTGATGTCCACGCTGTGTCCATAAAGGGGTCTCGAACAGGATGGCAAGCCATGTCTAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTCAACGGCCAAGGTCTTTCCTTTCAAGTCACTCTGAGTGATGGTCACACTCTCACTGCCTATAATCTCGTCCCTTCCAATTGGCAATTTGGCCAAACATTTGAAGGCCCTCAATTCTAA 855 48.89 MASCPILLYKSPLSPPKPTNPSFHDIFKITILMAFYSPFSSLFLLPFFFIYFPFAFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGHTLTAYNLVPSNWQFGQTFEGPQF 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6785317 6788418 - ClCG07G005080.2 Cla07g00480 276468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00480 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 281 IPR007117 -
Cla07g00480 284 Pfam Expansin C-terminal domain 193 270 IPR007117 -
Cla07g00480 284 Gene3D - 192 284 IPR036749 -
Cla07g00480 284 PRINTS Expansin signature 92 106 IPR002963 GO:0009664
Cla07g00480 284 PRINTS Expansin signature 119 130 IPR002963 GO:0009664
Cla07g00480 284 PRINTS Expansin signature 131 141 IPR002963 GO:0009664
Cla07g00480 284 PRINTS Expansin signature 150 167 IPR002963 GO:0009664
Cla07g00480 284 PRINTS Expansin signature 167 180 IPR002963 GO:0009664
Cla07g00480 284 PRINTS Expansin signature 191 203 IPR002963 GO:0009664
Cla07g00480 284 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Cla07g00480 284 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Cla07g00480 284 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Cla07g00480 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 80 192 IPR007112 -
Cla07g00480 284 PANTHER EXPANSIN-A15 42 284 IPR002963 GO:0009664
Cla07g00480 284 Pfam Lytic transglycolase 97 182 IPR009009 -
Cla07g00480 284 SUPERFAMILY PHL pollen allergen 189 281 IPR036749 -
Cla07g00480 284 SUPERFAMILY Barwin-like endoglucanases 61 210 IPR036908 -
Cla07g00480 284 SMART dpbb_1 97 182 IPR007112 -
Cla07g00480 284 PANTHER EXPANSIN 42 284 - -
Cla07g00480 284 Gene3D - 54 188 IPR036908 -
Cla07g00480 284 PRINTS Expansin/Lol pI family signature 61 76 IPR007118 GO:0005576
Cla07g00480 284 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Cla07g00480 284 PRINTS Expansin/Lol pI family signature 101 119 IPR007118 GO:0005576
Cla07g00480 284 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576
Cla07g00480 284 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Cla07g00480 284 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00480 Cla11g00546 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01959 Cla-Chr2:34678805 Cla07g00480 Cla-Chr7:6785317 4.79E-122 dispersed
Cla04g00803 Cla-Chr4:23068149 Cla07g00480 Cla-Chr7:6785317 1.79E-128 dispersed
Cla04g01190 Cla-Chr4:27061578 Cla07g00480 Cla-Chr7:6785317 2.93E-76 dispersed
Cla07g00480 Cla-Chr7:6785317 Cla11g00693 Cla-Chr11:8177039 2.57E-130 dispersed
Cla10g00645 Cla-Chr10:9839331 Cla07g00480 Cla-Chr7:6785317 3.46E-82 transposed
Cla11g00546 Cla-Chr11:6206278 Cla07g00480 Cla-Chr7:6785317 9.49E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00480 - - csv:101209633 490.73