Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00485 ATGTCCTCCGAAGACATCAATGGCCTCAACTCCCAGCTCGTCTTCCAAGACGAAGCCCTCCCCTTCAATTGCTCCACCACGCCGCAGCGTCGCGTCCCCGACCCAGGTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGGCGTGGACCGAGACCGATTCTTTTCCCACCAGGGTGAAGATTTCCGCCGCAGTGTTTTCGGTCACACCCGGAATTGGAATGGGAATGGGACTGCGAGAACTGGAAGTGGGAAAGGGTCGGATGAGGATGATGATGATGACGACGATGATGAAGATGAAGTCGATGATGGTGATGATGATGTTGAGGGGCTTGTTTCTTTGGATGATGTCAATAAGTGTACTAAAACTTCTATCCCCAACGATAGCAACAATGATAGAAGCGATCAGAGTAGTGAGGGCTTGAAGAATGGGACCAACAAATTGGGAAATGGGAAGCTTAAGCACCATTCTTCTTTTGGTGGAACTCTGTTAGTCAAGGATGGTTTAGTTGGCTCTTCAGGCAACAACACAGGAGCAACTCAGAGTGAGAACCATCCGCAGGGAAGGTTGGGGAACTACCCAAATGCTGTTACAATTGCAGAACCTGAAAGTGATGCTTATTATTCCCAGTATTTGCAAAGCACTGAAGTGTCTGCTTCTGGGCAGAAGGATTTGGGTATGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTGTCGTTTTCAGGAGAGCCTGGAGAGTCTTTGAGAGCAATTCTCACTGACCCTGTGACGGGCGCTCTCATGGACGATGCAATGATATTGCCGTGTGGACATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGCTCTCAGTCAGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAATTAATATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGTATATGCTTTGTACCTCGGACCACAGTATCTTAAGCCTGCTAATGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACCACAAGAGGTCGAGGTGTTCAGTTTCCTTTCGCAGTGACTGATAGGGGGAACAAGAGGACACCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCACTTGCGAAGGTTCCAAATGATGCAACATCAAAGACGATAACAAGGAAGATCACACCAAATTGGCTTTAG 1338 47.61 MSSEDINGLNSQLVFQDEALPFNCSTTPQRRVPDPGPKTRELCGFMDDKLFPGVDRDRFFSHQGEDFRRSVFGHTRNWNGNGTARTGSGKGSDEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCTKTSIPNDSNNDRSDQSSEGLKNGTNKLGNGKLKHHSSFGGTLLVKDGLVGSSGNNTGATQSENHPQGRLGNYPNAVTIAEPESDAYYSQYLQSTEVSASGQKDLGMENGCGFGRRDVSFSGEPGESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELIFYRSPKRRRERFEQVYALYLGPQYLKPANDKGGYGDLTLMDTTRGRGVQFPFAVTDRGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATSKTITRKITPNWL 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6900000 6904816 - ClCG07G005120.2 Cla07g00485 276473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00485 445 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 37 445 - -
Cla07g00485 445 MobiDBLite consensus disorder prediction 122 150 - -
Cla07g00485 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Cla07g00485 445 MobiDBLite consensus disorder prediction 175 199 - -
Cla07g00485 445 MobiDBLite consensus disorder prediction 93 116 - -
Cla07g00485 445 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 37 445 - -
Cla07g00485 445 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842|GO:0016567
Cla07g00485 445 MobiDBLite consensus disorder prediction 72 159 - -
Cla07g00485 445 MobiDBLite consensus disorder prediction 175 196 - -
Cla07g00485 445 MobiDBLite consensus disorder prediction 74 88 - -
Cla07g00485 445 SUPERFAMILY RING/U-box 252 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00485 Cla-Chr7:6900000 Cla11g00109 Cla-Chr11:1394602 1.82E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00485 - - mcha:111015962 694.501