Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00485 ATGTCCTCCGAAGACATCAATGGCCTCAACTCCCAGCTCGTCTTCCAAGACGAAGCCCTCCCCTTCAATTGCTCCACCACGCCGCAGCGTCGCGTCCCCGACCCAGGTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGGCGTGGACCGAGACCGATTCTTTTCCCACCAGGGTGAAGATTTCCGCCGCAGTGTTTTCGGTCACACCCGGAATTGGAATGGGAATGGGACTGCGAGAACTGGAAGTGGGAAAGGGTCGGATGAGGATGATGATGATGACGACGATGATGAAGATGAAGTCGATGATGGTGATGATGATGTTGAGGGGCTTGTTTCTTTGGATGATGTCAATAAGTGTACTAAAACTTCTATCCCCAACGATAGCAACAATGATAGAAGCGATCAGAGTAGTGAGGGCTTGAAGAATGGGACCAACAAATTGGGAAATGGGAAGCTTAAGCACCATTCTTCTTTTGGTGGAACTCTGTTAGTCAAGGATGGTTTAGTTGGCTCTTCAGGCAACAACACAGGAGCAACTCAGAGTGAGAACCATCCGCAGGGAAGGTTGGGGAACTACCCAAATGCTGTTACAATTGCAGAACCTGAAAGTGATGCTTATTATTCCCAGTATTTGCAAAGCACTGAAGTGTCTGCTTCTGGGCAGAAGGATTTGGGTATGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTGTCGTTTTCAGGAGAGCCTGGAGAGTCTTTGAGAGCAATTCTCACTGACCCTGTGACGGGCGCTCTCATGGACGATGCAATGATATTGCCGTGTGGACATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGCTCTCAGTCAGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAATTAATATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGTATATGCTTTGTACCTCGGACCACAGTATCTTAAGCCTGCTAATGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACCACAAGAGGTCGAGGTGTTCAGTTTCCTTTCGCAGTGACTGATAGGGGGAACAAGAGGACACCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCACTTGCGAAGGTTCCAAATGATGCAACATCAAAGACGATAACAAGGAAGATCACACCAAATTGGCTTTAG 1338 47.61 MSSEDINGLNSQLVFQDEALPFNCSTTPQRRVPDPGPKTRELCGFMDDKLFPGVDRDRFFSHQGEDFRRSVFGHTRNWNGNGTARTGSGKGSDEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCTKTSIPNDSNNDRSDQSSEGLKNGTNKLGNGKLKHHSSFGGTLLVKDGLVGSSGNNTGATQSENHPQGRLGNYPNAVTIAEPESDAYYSQYLQSTEVSASGQKDLGMENGCGFGRRDVSFSGEPGESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELIFYRSPKRRRERFEQVYALYLGPQYLKPANDKGGYGDLTLMDTTRGRGVQFPFAVTDRGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATSKTITRKITPNWL 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6900000 6904816 - ClCG07G005120.2 Cla07g00485 276473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00485 445 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 37 445 - -
Cla07g00485 445 MobiDBLite consensus disorder prediction 122 150 - -
Cla07g00485 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Cla07g00485 445 MobiDBLite consensus disorder prediction 175 199 - -
Cla07g00485 445 MobiDBLite consensus disorder prediction 93 116 - -
Cla07g00485 445 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 37 445 - -
Cla07g00485 445 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842|GO:0016567
Cla07g00485 445 MobiDBLite consensus disorder prediction 72 159 - -
Cla07g00485 445 MobiDBLite consensus disorder prediction 175 196 - -
Cla07g00485 445 MobiDBLite consensus disorder prediction 74 88 - -
Cla07g00485 445 SUPERFAMILY RING/U-box 252 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00485 - - - mcha:111015962 694.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00485 Cla-Chr7:6900000 Cla11g00109 Cla-Chr11:1394602 1.82E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g172 . . . . . . . . . . Cma04g01063 Cma04g00104 Car04g00098 . . . . . . . . . . . Cla07g00485 Cam07g0521 Cec07g0574 . Clacu07g0529 Cmu07g0566 Cre07g0899 Cone1ag1616 Cone5ag0138 . . . . Chy10g00311 Cme10g01252 . . . . . . . . . . . . . . . Cpe01g00964 . . . . . . . . . . . . . . . Lsi04g01019 Csa05g00898 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g00152 . 2 744 Plant U-box Gene Family AT5G57035 54.5 2.0e-228 789.3
Cla07g00485 . 201 445 Plant U-box Gene Family AT5G05230 53.1 2.3e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00485 Cla_Chr07 FPKM 10.766154 10.769688 45.597359 42.607941 22.202879 26.385408 20.788383 4.292158 4.018629 3.207002