Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00487 ATGCGAGCATTGTTGAAGATGAAACGGCTGATTGAGCTCATCTTCTTGTTCGTTTTGACTCCACTTTGTGCTCGATGTGTAAACCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCTGCTGTTCAAGATCCGAAGCTGAAGCTCGCGAGCTGGAACGAAGATGACGATAGTCCCTGCAATTGGACTGGTGTTCAATGCAGCCCCAGATCCAACCGGGTCATCGAGCTCAACCTCGATGGGTTTTCTCTCTCGGGTCGGCTCGGCCGCGGACTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGCTCTCGAAGAACAATCTTAGTGGGAATATAAGCCCTAATTTCGCTCGAGTCGACAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCTGGTACTGTTCCGGATGATTTTTTTCGTCAATGTAGGTCATTGAGAGTCATCTCTTTGGCCAACAACAAATTTTCTGGGGAAATTCCTGATAGTTTGAGCTTGTGCGGGAGTCTTATTGCAGTTAACTTTTCCTCAAATCAGTTTTCGGGTTCTTTGCCTTCTGGGATTTGGTCTTTCAGTGGACTTCGATCTTTGGACTTGTCTGATAATGCTCTAGTGGGTGAAATTCCGAAAGTAAGTGAGAAGTTGTATAATCTGCGGACTCTTAACTTGAGCAAGAATCGGTTTTCTGGACAGATTCCTGATGGTATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGCGATAATTCATTCTCTGGGACTCTTCCTCAGACCATGCAGAAACTTGTTTTGTGTGTTGATCTGATTTTAAGCAGGAATTTGTTTGAAGGAGATGTTCCAGAGTGGATAGGAGAAATGAAAAACCTTGAAACTCTGGACTTTTCAGGGAACAATTTTACTGGCCGTATACCAACTACAATGGAGAATCTTCAATATCTAAAAGTATTAAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAATCTGTGTTGAAGTGCCAAAGCCTTTTGGCATTAGATTTCAGCCATAACTTGATCACGGGTAATCTTCCCGCGATCGGAAGTTTAGGCAAGCTGCAGTTTCTGAACCTGTCTGGGAATTCTTTTGTTGGTCCTATTCCAGAAACTATTGGAGATTTGAAAGCTTTAAGCATTCTTGACTTGAGTGGAAATCAGCTGAATGAAACCATTCCTGATGCAATTGGAGGAGCTGTGTCCCTAATTGAGCTGAAGCTGGATGGAAATTTTCTAGGCGGTGAAATTCCCTCTTCAATTGGTCACTGTTCTTCCCTTTCAGCTCTGTTCATATCACACAATAACTTAACTGGTCCGATACCAGCAGCACTATCTAAACTCTCTTATCTTCAAAATGTCGATTTATCTTTCAACAATCTCAATGGAACCCTTCCGAAGCAGTTGTCTAATCTTCCAAACCTTCTTGTGTTCAATATATCTCACAACAACCTCAACGGTGAGCTGCCTGGTGGTGGATTCTTTAACACCATCTCCCCTTCATCTGTTGCTAGCAATCCATCCCTTTGTGGCGCTGTTGTTAATAAGTCTTGCCCTTCTGTCCTTCCAAAACCTATCGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTAATAATCACAGAAGAAATAGAAATATCCTCAGCATTTCTGCGCTGGTTGCCATTGGTGCCGCGGCTTTCATAATCATTGGTGTTATATCGATCACCATCCTGAACCTTCGCGTTCAATCACCCACATCTTCTTTGTCCGCAGCTGCACTCGCATTATCTGTAGGGGATGATTTCAGTAATTCCTCCAGTCCTGATGCGAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACAGGAGCACATGCCCTGCTGAACAAGGATTGTGAACTTGGGCGTGGTGGATTTGGAGCAGTTTACCATACTATTCTGCGGGACGGACACTCCGTTGCAATCAAGAAGCTTACAGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTCGGGATTGTCAGGCACCAAAATCTCGTTGCACTCGAAGGTTATTATTGGACTCCCTCACTACAGCTCCTTATTTACGAATTTGTCCCCGGAGGTAGCTTGTATAGGTTGCTCCATGAAGCATCAGATGACAGTGTTCTTTCATGGAATGAGAGATTCGACATAATTCTTGGGACAGCAAAAGGTCTTGCTCACTTACATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGATTGTAATGGTCAACCGAAGGTGGGAGATTATGGGCTAGCTAGATTACTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAGAGCGCACTTGGTTACATGGCACCAGAGTTTGCTTGCAGGACGGTAAAGATAACCGAAAAATGCGATGTATATGGTTTTGGGATATTGATTCTAGAGGTGGTTACGGGGAAGAGACCTGTCGAGTACATGGAAGATGACGTTGCAGTCCTCTGTGACATGGTCCGAGAAGCAGTGGAAGAAGGAAGAGCGGAAGAATGCATTGACAGGAAACTGAGGGGGTATTTCCCTGTTGAAGAGGCTGTTCCCGTGTTAAAATTAGGGTTGATATGCACCTCCCATGTGCCATCAAACCGACCCGACATGAGAGAAATGGTCAAGATATTGGAGATGATCAAATGCCCAGCTGAATTACAAGAGGAATTGGGATAA 2778 43.66 MRALLKMKRLIELIFLFVLTPLCARCVNLSLNDDVLGLIVFKAAVQDPKLKLASWNEDDDSPCNWTGVQCSPRSNRVIELNLDGFSLSGRLGRGLFQLEFLQRLSLSKNNLSGNISPNFARVDNLQVIDLSGNNFSGTVPDDFFRQCRSLRVISLANNKFSGEIPDSLSLCGSLIAVNFSSNQFSGSLPSGIWSFSGLRSLDLSDNALVGEIPKVSEKLYNLRTLNLSKNRFSGQIPDGIGSCLLLRSIDLSDNSFSGTLPQTMQKLVLCVDLILSRNLFEGDVPEWIGEMKNLETLDFSGNNFTGRIPTTMENLQYLKVLNLSSNGFTDSFPESVLKCQSLLALDFSHNLITGNLPAIGSLGKLQFLNLSGNSFVGPIPETIGDLKALSILDLSGNQLNETIPDAIGGAVSLIELKLDGNFLGGEIPSSIGHCSSLSALFISHNNLTGPIPAALSKLSYLQNVDLSFNNLNGTLPKQLSNLPNLLVFNISHNNLNGELPGGGFFNTISPSSVASNPSLCGAVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHRRNRNILSISALVAIGAAAFIIIGVISITILNLRVQSPTSSLSAAALALSVGDDFSNSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTILRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVPGGSLYRLLHEASDDSVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVREAVEEGRAEECIDRKLRGYFPVEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPAELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6924354 6928312 - ClCG07G005140.1 Cla07g00487 276475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00487 925 CDD STKc_IRAK 648 912 - -
Cla07g00487 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 358 916 - -
Cla07g00487 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 7 358 - -
Cla07g00487 925 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515
Cla07g00487 925 Gene3D Ribonuclease Inhibitor 32 313 IPR032675 -
Cla07g00487 925 SMART LRR_typ_2 386 410 IPR003591 -
Cla07g00487 925 SMART LRR_typ_2 98 121 IPR003591 -
Cla07g00487 925 SMART LRR_typ_2 291 315 IPR003591 -
Cla07g00487 925 SMART LRR_typ_2 482 506 IPR003591 -
Cla07g00487 925 SMART LRR_typ_2 122 146 IPR003591 -
Cla07g00487 925 SMART LRR_typ_2 219 243 IPR003591 -
Cla07g00487 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Cla07g00487 925 SUPERFAMILY RNI-like 79 400 - -
Cla07g00487 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 358 916 - -
Cla07g00487 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 358 - -
Cla07g00487 925 Gene3D Ribonuclease Inhibitor 314 532 IPR032675 -
Cla07g00487 925 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515
Cla07g00487 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Cla07g00487 925 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cla07g00487 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672|GO:0006468
Cla07g00487 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00487 925 SUPERFAMILY L domain-like 362 516 - -
Cla07g00487 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Cla07g00487 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Cla07g00487 925 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00487 Cla11g00542 CCT
Cla07g00487 Cla11g00542 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00487 Cla-Chr7:6924354 Cla10g02150 Cla-Chr10:37115218 0 dispersed
Cla03g01355 Cla-Chr3:29012207 Cla07g00487 Cla-Chr7:6924354 1.06E-17 transposed
Cla11g00803 Cla-Chr11:11838160 Cla07g00487 Cla-Chr7:6924354 2.68E-44 transposed
Cla11g00542 Cla-Chr11:6152622 Cla07g00487 Cla-Chr7:6924354 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80677 PF07714 PK_Tyr_Ser-Thr 4.20E-40 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00487 - - csv:101217762 1625.91