Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g00490 | ATGGAGGCTCCTTCTTCTTCTTCTTCAATCAAATGGAGCTCTGAAAATGAAAATGGATCTCAACCTCATGTTCTTGCTGTTGATGATAATCTTGTTGATCGTAAACTTGTTGAGAAATTACTCAAAAACTCCTCTTGTAAAGTAACGACGGCAGAAAATGGTGTTAGTGCTTTGGAGTTCTTAGGTTTGTTGGATGAACATAATCAACACAGCAACTTAGAATGCTCCAATAGGTCAAAGGTGAACATGATCATCACAGATTATTGCATGCCAGGAATGTCTGGATATGAACTTCTCAAGAAAATCAAGAGATCTTCGATGATGAAGGAAGTTCCTGTGGTGGTTGTATCATCGGAAAACGTGCCCACTCGCATCAACAAGTGTTTGAAAGAAGGAGCAGAGATGTTCATGCTGAAACCTTTGAAACAATCTGATGTGGTGAAACTCAAGTGCCAGTTGATGAACTGA | 468 | 39.53 | MEAPSSSSSIKWSSENENGSQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSALEFLGLLDEHNQHSNLECSNRSKVNMIITDYCMPGMSGYELLKKIKRSSMMKEVPVVVVSSENVPTRINKCLKEGAEMFMLKPLKQSDVVKLKCQLMN | 155 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 6980106 | 6982186 | + | ClCG07G005170.1 | Cla07g00490 | 276478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g00490 | 155 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 13 | 154 | IPR045279 | GO:0009736 | |
| Cla07g00490 | 155 | Pfam | Response regulator receiver domain | 24 | 148 | IPR001789 | GO:0000160 | |
| Cla07g00490 | 155 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE | 13 | 154 | - | - | |
| Cla07g00490 | 155 | Gene3D | - | 18 | 155 | - | - | |
| Cla07g00490 | 155 | SMART | REC_2 | 22 | 150 | IPR001789 | GO:0000160 | |
| Cla07g00490 | 155 | SUPERFAMILY | CheY-like | 20 | 149 | IPR011006 | - | |
| Cla07g00490 | 155 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cla07g00490 | 155 | ProSiteProfiles | Response regulatory domain profile. | 23 | 154 | IPR001789 | GO:0000160 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00490 | Cla-Chr7:6980106 | Cla10g01535 | Cla-Chr10:30671838 | 7.14E-51 | dispersed | |
| Cla07g00490 | Cla-Chr7:6980106 | Cla06g01631 | Cla-Chr6:29836743 | 2.65E-44 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61395 | PF00072 | Response_reg | 1.10E-21 | CL0304 | Cla | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g00490 | K14492 | - | csv:101208898 | 248.44 |