Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00504 ATGGAGACCTCGCCTTCCAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGTACCTCCTCCAGATTTGGCCTCTCGCTCCCTTCCCTCAATTTCTTCCGTTCGCCTTTGTCTGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCCGACCCTGTAATCAACGCCGCTGCCACGCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATCACCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCACAACCTCTTCTGGTAATACTATCCCCTCTGGGGAGGTTTCCATAAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGGCTTGTTGCCAAATCAGGCTGGTTATGAGCAAAATGGCAGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCAACTGCTTCTTCATCTATTCAATCTGGAAGCACTCGTGTCGATGGAGAATCTGGAAATGGAATGGAAGAGAGTGTCAATAGAGATTCGTCTTACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCGTTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCACTTAGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCGAACGACATTGTCAAGAAACAGACTGCTCTAAAGGTGGGAGAGAGGAAAATTTCTGTCCTTGCTGGAACTTCTATTGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGACGATCTTCTATACCCCTTAGTCATGCTTCCACCAAAGACAGTACCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTTAACGATACGATGGTGAGGCAGTTTGCTATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGTCGGCAGGGTCAAATCTTAACTCTTGTGGAATACACTCTTCTATTGTACCGTGCATTATTACCAACACCTGTATGGTACAGATTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCGCTAACAACAGGATTATATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTTGTTGCTGCATTTAAGGCTCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGCAAGTACACTTATTCTGTCTCACCAAGAGACAAAAAGTCATTATCGTGATTTGGCAATTGGCCCCAATCATTTCCTAAACATGGAACCAGGAAAAGTAAATGCTGCGGGAGACCTCTGTGCCATTTGCCAGGAGAAGATGAATGCTCCAATCCTATTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAGAGAACTTGCCCTCTTTGCCGGGCACTGGTTACAAGTTCGAGACGTCAATCTCTCAACCATTGTTTGGGTTTAGGGTACGTGATTATTATAGTTTGA 1554 42.86 METSPSNSDPYSNSSSPTTARTSSRFGLSLPSLNFFRSPLSVILDYSGILPTRAVRHESDPVINAAATPDLRVYSQNQNHLITTSSSSSSSSSSSATTSSGNTIPSGEVSIRIIGSGEQDPSPSGLLPNQAGYEQNGRLPVSGDQPESPDEERVPLVSTASSSIQSGSTRVDGESGNGMEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKVGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQFAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQASTLILSHQETKSHYRDLAIGPNHFLNMEPGKVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVTSSRRQSLNHCLGLGYVIIIV 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7286543 7295532 - ClCG07G005290.2 Cla07g00504 276492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00504 517 SUPERFAMILY RING/U-box 454 499 - -
Cla07g00504 517 ProSitePatterns Zinc finger RING-type signature. 470 479 IPR017907 -
Cla07g00504 517 SMART ring_2 455 492 IPR001841 -
Cla07g00504 517 MobiDBLite consensus disorder prediction 82 109 - -
Cla07g00504 517 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 417 - -
Cla07g00504 517 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 447 503 - -
Cla07g00504 517 Pfam Zinc finger, C3HC4 type (RING finger) 453 497 - -
Cla07g00504 517 MobiDBLite consensus disorder prediction 1 24 - -
Cla07g00504 517 ProSiteProfiles Zinc finger RING-type profile. 455 493 IPR001841 -
Cla07g00504 517 CDD RING-HC_RNFT1_like 454 493 - -
Cla07g00504 517 MobiDBLite consensus disorder prediction 155 184 - -
Cla07g00504 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 505 IPR013083 -
Cla07g00504 517 MobiDBLite consensus disorder prediction 82 184 - -
Cla07g00504 517 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 417 IPR044235 GO:0061630|GO:1904294
Cla07g00504 517 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 447 503 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00624 Cla-Chr4:20536039 Cla07g00504 Cla-Chr7:7286543 4.37E-78 dispersed
Cla07g00504 Cla-Chr7:7286543 Cla10g00873 Cla-Chr10:19995890 4.68E-10 dispersed
Cla07g00504 Cla-Chr7:7286543 Cla03g00142 Cla-Chr3:1496146 7.19E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00504 - K22379 csv:101207430 828.55