Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g00504 | ATGGAGACCTCGCCTTCCAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGTACCTCCTCCAGATTTGGCCTCTCGCTCCCTTCCCTCAATTTCTTCCGTTCGCCTTTGTCTGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCCGACCCTGTAATCAACGCCGCTGCCACGCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATCACCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCACAACCTCTTCTGGTAATACTATCCCCTCTGGGGAGGTTTCCATAAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGGCTTGTTGCCAAATCAGGCTGGTTATGAGCAAAATGGCAGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCAACTGCTTCTTCATCTATTCAATCTGGAAGCACTCGTGTCGATGGAGAATCTGGAAATGGAATGGAAGAGAGTGTCAATAGAGATTCGTCTTACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCGTTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCACTTAGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCGAACGACATTGTCAAGAAACAGACTGCTCTAAAGGTGGGAGAGAGGAAAATTTCTGTCCTTGCTGGAACTTCTATTGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGACGATCTTCTATACCCCTTAGTCATGCTTCCACCAAAGACAGTACCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTTAACGATACGATGGTGAGGCAGTTTGCTATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGTCGGCAGGGTCAAATCTTAACTCTTGTGGAATACACTCTTCTATTGTACCGTGCATTATTACCAACACCTGTATGGTACAGATTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCGCTAACAACAGGATTATATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTTGTTGCTGCATTTAAGGCTCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGCAAGTACACTTATTCTGTCTCACCAAGAGACAAAAAGTCATTATCGTGATTTGGCAATTGGCCCCAATCATTTCCTAAACATGGAACCAGGAAAAGTAAATGCTGCGGGAGACCTCTGTGCCATTTGCCAGGAGAAGATGAATGCTCCAATCCTATTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAGAGAACTTGCCCTCTTTGCCGGGCACTGGTTACAAGTTCGAGACGTCAATCTCTCAACCATTGTTTGGGTTTAGGGTACGTGATTATTATAGTTTGA | 1554 | 42.86 | METSPSNSDPYSNSSSPTTARTSSRFGLSLPSLNFFRSPLSVILDYSGILPTRAVRHESDPVINAAATPDLRVYSQNQNHLITTSSSSSSSSSSSATTSSGNTIPSGEVSIRIIGSGEQDPSPSGLLPNQAGYEQNGRLPVSGDQPESPDEERVPLVSTASSSIQSGSTRVDGESGNGMEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKVGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQFAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQASTLILSHQETKSHYRDLAIGPNHFLNMEPGKVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVTSSRRQSLNHCLGLGYVIIIV | 517 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7286543 | 7295532 | - | ClCG07G005290.2 | Cla07g00504 | 276492 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g00504 | 517 | SUPERFAMILY | RING/U-box | 454 | 499 | - | - | |
Cla07g00504 | 517 | ProSitePatterns | Zinc finger RING-type signature. | 470 | 479 | IPR017907 | - | |
Cla07g00504 | 517 | SMART | ring_2 | 455 | 492 | IPR001841 | - | |
Cla07g00504 | 517 | MobiDBLite | consensus disorder prediction | 82 | 109 | - | - | |
Cla07g00504 | 517 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 417 | - | - | |
Cla07g00504 | 517 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 447 | 503 | - | - | |
Cla07g00504 | 517 | Pfam | Zinc finger, C3HC4 type (RING finger) | 453 | 497 | - | - | |
Cla07g00504 | 517 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cla07g00504 | 517 | ProSiteProfiles | Zinc finger RING-type profile. | 455 | 493 | IPR001841 | - | |
Cla07g00504 | 517 | CDD | RING-HC_RNFT1_like | 454 | 493 | - | - | |
Cla07g00504 | 517 | MobiDBLite | consensus disorder prediction | 155 | 184 | - | - | |
Cla07g00504 | 517 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 436 | 505 | IPR013083 | - | |
Cla07g00504 | 517 | MobiDBLite | consensus disorder prediction | 82 | 184 | - | - | |
Cla07g00504 | 517 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 1 | 417 | IPR044235 | GO:0061630|GO:1904294 | |
Cla07g00504 | 517 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 447 | 503 | IPR044235 | GO:0061630|GO:1904294 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00624 | Cla-Chr4:20536039 | Cla07g00504 | Cla-Chr7:7286543 | 4.37E-78 | dispersed | |
Cla07g00504 | Cla-Chr7:7286543 | Cla10g00873 | Cla-Chr10:19995890 | 4.68E-10 | dispersed | |
Cla07g00504 | Cla-Chr7:7286543 | Cla03g00142 | Cla-Chr3:1496146 | 7.19E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g00504 | - | K22379 | csv:101207430 | 828.55 |