Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00531 ATGGAGGAAATAAATATCTCAAAGGCTCTGTCCAATCACTTCCATTTTCAGGTTCTGACGGAAGAAAGAAAGCGGCGAATGCCAATGGCGAAAAAGGATGATGAACCGGAGCTTCGGAGCTCCGGCAAGAGGCTAAAATGCTCTAAGCACGACGATGAACACCTCGGTAATGAAGAAGAAGAAGAGCAGGTGAGCGAGCTTCCATTGAAACCGGGGCTTTTCTTCTACCCAATGACGCCAACTTCCTTCGTGGTCTCTGATGCTCTGGAGCCCGATTTTCCAATCATCTACGTCAACAAAGTCTTCGAGATCTTCACTGGATACCGTGCCGATGAGGTCCTCGGCCAGAATTGGTATGACGGGATTCAATTCCGCGATTATTTTAGTTGTTTTCCTGTTCTTGTTTTTGCTGGATGTTATAGGAGGCAGAGTCGGTTCTTACAATATAGAGATCCTCGTGCACAAAGGCGTCACCCTCTGGTAGATCCGGTGGTTGTTTCTGAAATCAGAAGATGTCTTGAGGAAGGTGTTGAATTCCAAGGTGAGCTCCTCAATTTCAGAAAGGATGGCACTCCTATGGTGAACAGGTTACGGCTAGCACCCATACATGATGATGATGGGACTGTAACACACATAATAGGAATTCAAGTGTTTTCTGAGACAAAGATAGACCTTAATCGGTTGTCATATCCCGTCTTCAAAGAAAATTGTGCTATAAAATATGATCTATCAGGCAAAAGTGCTCATCTGATTGATCAATCACCGTTTGGCCACCATAAAGAAATCTGTAGGATACTACAGCTTTCAGATGAAGTCTTGGCCCATAACATTTTATCACGCTTAACACCACGAGATGTTGCATCTGTCGGATCAGTGTGCCGAAGGATTCGTCAATTGACGAAGAATGAGCATTTAAGGAAGATGGTATGCCAGAATGCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAAAGAAACTCGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCTGTATGTTGGAGAAAACTGACAGTTGGGGGAGCTGTGGAGCCTTTACGTTGCAACTTTAGTGCTTGTGCGGCAGGTAATCGACTTGTATTATTTGGTGGAGAAGGAGTCAATATGCAACCCATGGATGATACCTTTGTTCTCAATCTTGATGCTGCAAATCCCGAGTGGCGCAGAGTCAGTGTGAAATCCTCCCCACCTGGACGTTGGGGCCACACTCTATCATGTTTGAATGGTTCTTGGTTAGTCGTTTTTGGTGGATGTGGCAGTCAAGGATTGCTCAACGACGTGTTTGTACTCGATTTGGATGCGCAGCAACCAACATGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCGAAACTGGTTGTTTCAGGTGGATGCACAGATGCCGGTGTGCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGATAAGCCAACCTGGAGAGAGATTCCCACATCCGGGACACCCCCATCTAGATTGGGACATTCTCTTTCAGTTTATGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGCGGGCACTTACGCTTACGATCAGGCGAGGCGTACACCATAGATTTAGAAGAGGAAGAACCCCAGTGGAGGCAACTTGAGTGCAGTGCATTCACTGGCATTGGCGGTCAGAGTGCTGTGGTTCCTCCACCAAGACTCGATCATGTAGCAGTCAGCATGCCTTGTGGAAGGATTATCATTTTCGGTGGCTCCATTGCTGGGCTACATTCACCTTCTCAACTTTTCCTTTTGGATCCAGCCGAGGAGAAGCCGTCATGGAGGATTCTCAACGTTCCTGGACAACCACCTAAATTTGCTTGGGGCCACAGTACTTGTGTGGTTGGAGGTACAAGAGTTTTGGTATTGGGCGGCCACACCGGGGAAGAATGGATACTAAATGAATTACACGAACTCTGCTTGGCTAGCAGGCAAGATTCAGATCTTTGA 2037 46.69 MEEINISKALSNHFHFQVLTEERKRRMPMAKKDDEPELRSSGKRLKCSKHDDEHLGNEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNWYDGIQFRDYFSCFPVLVFAGCYRRQSRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKENCAIKYDLSGKSAHLIDQSPFGHHKEICRILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTKKLGWGRLARELTTLEAVCWRKLTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPQWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8080605 8083929 + ClCG07G005530.2 Cla07g00531 276519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00531 678 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 142 675 - -
Cla07g00531 678 Pfam Galactose oxidase, central domain 359 409 - -
Cla07g00531 678 SUPERFAMILY Galactose oxidase, central domain 346 663 IPR011043 -
Cla07g00531 678 Gene3D PAS domain 77 227 - -
Cla07g00531 678 Pfam PAS domain 89 216 IPR000014 -
Cla07g00531 678 Gene3D - 338 540 IPR015915 GO:0005515
Cla07g00531 678 ProSiteProfiles PAS repeat profile. 95 117 IPR000014 -
Cla07g00531 678 SUPERFAMILY PYP-like sensor domain (PAS domain) 90 215 IPR035965 -
Cla07g00531 678 Pfam F-box domain 265 305 IPR001810 GO:0005515
Cla07g00531 678 PANTHER ADAGIO PROTEIN 3 142 675 - -
Cla07g00531 678 Pfam Kelch motif 583 630 IPR011498 GO:0005515
Cla07g00531 678 MobiDBLite consensus disorder prediction 22 65 - -
Cla07g00531 678 Gene3D - 259 309 - -
Cla07g00531 678 SUPERFAMILY F-box domain 260 317 IPR036047 GO:0005515
Cla07g00531 678 Gene3D - 541 672 IPR015915 GO:0005515
Cla07g00531 678 PANTHER ADAGIO PROTEIN 3 38 127 - -
Cla07g00531 678 CDD PAS 79 215 IPR000014 -
Cla07g00531 678 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 38 127 - -
Cla07g00531 678 Pfam Galactose oxidase, central domain 473 524 - -
Cla07g00531 678 Pfam Galactose oxidase, central domain 424 469 - -
Cla07g00531 678 SMART pac_2 180 221 IPR001610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00531 K12116 FKF1; flavin-binding kelch repeat F-box protein 1 - csv:101222712 1231.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00531 Cla-Chr7:8080605 Cla11g01179 Cla-Chr11:24702717 0 dispersed
Cla07g00531 Cla-Chr7:8080605 Cla06g01533 Cla-Chr6:28888423 9.08E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00531 Cla_Chr07 FPKM 4.406229 4.701033 0.934878 0.80563 1.73232 2.041274 2.029251 1.932185 1.708223 1.83865