Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00539 TCGACTGACGGTCTGAACCGGGGCTCAAACACTCCCAAGCTCTTTGCTACTGAACTTTCTTCTCTCTCTCTCTCTCTCTTGATTCCCAAACGTTTAGTTGTACAGAAACCAAGGAATATACTTCTATACTACGCTCATTCAAAATTCCTACGCCGTTTACCCTCCAATCCCAGAGGGTTTCTGCTCTCAATTCCGCTTCCCAAATTTTGTTTTAGGGTTCCACACAAGATGGCATTGGATGAGGACGTCGTGCTGCGCGATGTCACCAATGCTGGTGTTGTCATCAGCGACCGCATTGCCAGAGAAGTTGCCACTCAACTTGATCTGGAGGAAGCGCTGGAAGCTTCCAGATACTCTAGCGATCCGTATACAACCCACCCCAGAGAGTGGCCTCCTCTAGTGGAAGTGGTGGATACTTGGGAGTTACCTCCAGTGCTTATAGAAAGATATAATGCTGCTGGAGGGGAAGGAACTGCCTTATGTGGAATATTTCCGGAAATACGAAGAGCTTGGGCATCTGTTGATAATTCTTTATTTCTTTGGCGATTTGACAAGCGGGATGGTCAATGTCCAGAGTTTAATGTGGAGGAGCAAGCCATCTGTGCCGTTGGCCTCACCATATCCAAGCCTGGTGTTTTTGTTGAGGCAATACAATATCTTTTAATTCTAGCTACACCAGCAGAGTTGATTCTTGTAGGAGTATGCTCTTCTGGTGGTGCTGATGGTATGGATCCATATGCAGAGATTTCGCTCCAGCCTTTGCCAGAGTATACTATTGCGTCAGATGGAGTCACTATGACTTGCATCACTTGCACTGACAAAGGGCGAATTTTTTTGGCTGGCCGTGATGGCAACATTTATGAGCTTCATTACACATCTGGTTCTGGTTGGCAAAAGCGATGTCATAAAATTTGCCTTACTTCTGGTTTAGGAAGTGTGATATCAAGATGGGTTGTGCCAAATGTATTCAAGTTTGGAGCTGTTGATCCCATTGTTGAGATGATCTATGATAGTGAAAGATGCATTTTATATACAAGAACTGAGGAAATGAAAGTTCAAGTATTTGTGTTGGGGTCCAATGGTGATGGACCGCTTAAGAAAGTAGCAGAAGAAAGAAATCTGATCAATCAAAGAAATGGAACTTATGGAAGTAGACAGTCAAAAGGACCTAGAGCTATGAGTCGATCAACAATGCCATCTATTGTCTGCATATCACTCTTATCTACACTTGAATCAAAGTCAATACACCTTCTAGCGGTTTTATCTGATGGTAGAAGGATGTATTTAACCACTTCATCATCAAATGGAAGCTTGGGTGCATATAGTTCCAACCATCAGACGCCAAGTTGTTTAAAAGTTGTGGCTACGAGGCCTTCTCCTCCTCTAGGTGTTGGCGGAGGACTTACATTTGGTGCCAACTCTATTTCTGGTAGACCTCAAAATGAAGAGTTGTTGCCGAAGGTTGAGACAGCATTTTACTCTGCTGGGACTTTAGTCCTCTCTGATTCATCACCACCAACTATATCTTCACTTCTCCTTGTGAGCAAGGATCCGGTAGCACAATCTTCCATATCTGGTACTTCAACCTTAAATGCAAGGACTTCTTTTGCTTTAAGGGAAATTGTTTCTTCTCTTCCTGTTGAAGGTCGAATGCTTTTTGTAGCAGATGTTTTACCCTTACCAGATGCTGCAGCCACTATGCAGTCTTTATATTCACAGATTGAATTTGGGGTGTCAGATTTCCCAGATGAGCATAGTGAAAAAGCAGTTGGAAAACTGTGGGCAAGAGGAGACCTATCTACCCAACACATATTACCTAGGAGGAGACTTGTTGTATTCAGTACCATGGGCATGATGGATATAGCTTTCAACAGGCCTGTGGATATTTTGAGAAGGTTGTTTGAGTCTAATTCGCCAAGATCAATTTTAGAAGACTTCTTCAAAAGGTTTGGAGCTGGTGAAGCAGCTGCCATGTGTCTAATGTTGGCTTCAAGGATTGTCCACTGTGAAACTCTCATAACCAATGTTATTGCAGACAAGGCAGGTGAAGCTTTCGAGGATCCTAGAATTGTTGGGATGCCTCAACTTGGAGGCAATACTGCCTTGTCAGACACAAGAACTGCTGCTGGTGGGTTTAGCATGGGTCAGGTTGCTCAGGAGGCTGTGCCAGTATTTTCAGGTGCACATGAAGGGCTCTGCTTGTGTTCATCAAGATTGCTTTTTCCACTCTGGGAACTTCCTGTTGTGGCTGTTAAAGGTATCTCAGATTCTTCAACTACACACAATGGATTAGTTGTATGTAGGCTTTCTGCTGGAGCCATGCAAATCCTTGAGCACAAGCTCCGTGCTCTTGAAAAGTTCCTAAGGTCAAGAAGGAACCAGAGAAGAGGACTTTATGGTTGTGTAGCTGGCTTGGGAGATGTTGCAGGTTCTATTCTTTATGGTAGTGGTTCAGATCTTGTTTCTAGTGATCGGAATATGGTGAAAAGCATTTTTGGTACATACACAAGAAACATGGAATCTGCTGGGACTGGAGCTTCTAATAAAAGGCAGAGATTACCTTACAGTCCTGCTGAGTTGGCGGCCATGGAGGTCAGGGCAATGGAATGTATTAGACAGCTGCTGCTTAGATCTGCTGAAGCTTTATTTTTGCTTCAGCTTCTTTCTCAACACCACTTAACACGCTTGGTTCAGGGCTTGGATGATAGTTTTAGGCAGGCAATAGCTCAATTGACTTTTAATCAGCTTGTTTGTTCAGCAGAGGGTGATAATCTTGCTACAAGACTTATATCTGCTCTAATGCAGTACTATACTGGTCCTGATGGCAGGGGAACTGTAGATGACATCAGTGGGAAATTAAGGGAAGGCTGTCCAAGCTACTTTAAAGAGTCTGACTATAAATTTTTCTTAGCCGTGGAATGTCTGGAGAGAGCTGCTGTGACTCTTGACCCCATGGAGAAAGAGAATCTTGCTAGGGAAGCCTTTAATTGTTTGAGTAAAATTCCAGAGTCTGCAGATTTACGGACTGTATGTAAACGTTTTGAGGATTTGAGATTCTATGAAGCAGTGGTTCGTTTGCCTCTGCAGAAAGCCCAGGCTCTTGATCCTGGAGGCAATGCTTTTAATGATCAAACTGATTTGGCTACTCGAGAACGTGCACTTTCCGAGCGTGAACAATGCTATGAAATAATTATAAGTGCTCTACGTTCTCTAAAAGGTGATGTCTCACCAAAGGAATTTGGATCTCCTATGAAGCCTGCTGCTTCAAGGTCCATTCCCGATATGGCAACACGTAGTAAATATATATGCCAGATTGTTCAGCTTGGAGTTCAATCCCCAGATAAAATATTCCATGATTACTTGTATCGGTCTATGATTGATTTGGGGCTTGACAATGAATTGTTAGAATATGGAGGACCAGATTTGGTACCGTTCCTGCAAAATGCTGGGCGGCATCCAATACAAGAGGTTCGAGCTGTCTCAGCTCTAACAGCTGGGGCTTCTCCTATTGGTCAGTCGGGAGCAGTTGGTGCAACAAATGAAGCCAAATTTTTTGATCTTTTAGCTCGATATTATGTTATGAAACGGCAACATTTGCTTGCTGCTCATGTGCTGCTAAGACTAGCTAGTAGACGCTCATCTGATCCTGGGGATGTTCTTACTTTGGAGGAGAGGTGCCAATACTTGAGCAATGCTGTTTTACAAGCAAAGAATGCAAACAGTTGCAAGGGGTTGGCAGGTTCTACCCCTGATACCTTAGACAATGGATTGCTTGAACAGCTTGAAGGGAAACTTGCTGTTCTTCGTTTCCAGATGAAAATTAAGGAGGAGCTGGAGGCTTTAGCTTCAAGAATAGAAGCCGTGGCAAGTACATCTGATTCAGTCCAAAATGAATTGATCCCAGATAATGATTTGGCTGCTAATTCTAGTATTGCAAATATGGCTCGGCAGAAGGCTAAAGAGCTCTCATTGGAGTTAAAGACTATAACTCAGCTATACAATGAATATGCTGTTCCATTTGAGTTATGGGAGATATGTTTGGAAATGTTGTACTTTGCAAACTATTCTTCTGATGGCAATACTAGTATCGTCAGAGAAACTTGGGCTCGATTAATTGACCAAGCTCTATCTACGGGTGGCATCGCTGAAGCTTGTTCAGTACTAAAAAGGGTTGGCTTCCACATTTACCCTGGCGATGGAGCTGGAATACCTTTGGAGTCTCTTTGTCTTCACCTTGAGAAGGCTGCATTGGAGAGATCCGAATCAGGTGTCGAATCTATTGGGAATGATGATGTTGCAAGAGCCCTTATTGCTGTTTGCAAGGGTGCAACTGAGCCAGTATTGAATGCTTATGATCAATTGTTGTTGAATGGTGCAATTCTGCCATCACCCAAACTCAGGTTACGCCTCCTCCAATCTGTGTTAGTGGTACTCCATGAGTGGGCTATGTCAATATCTTCACAGACTGTGGGTAGAAGTGCAACTGCAGCATCTCTAGTTCTTGCTGGAAAATACTCTTTGGATCAAATAGCTACTTTCAACCAAGGGGTTCGGGACAAGATAGCCAGCGCTGCTAACAGATATATGACTGAGGTTCGTAGGTTAGCCCTTCCACAAAACCAAACTGAGGCTATCTATCGAGGCTTTAAGGAGCTTGAAGAGTCACTAGGTGCATTTGACATG 4683 43.46 STDGLNRGSNTPKLFATELSSLSLSLLIPKRLVVQKPRNILLYYAHSKFLRRLPSNPRGFLLSIPLPKFCFRVPHKMALDEDVVLRDVTNAGVVISDRIAREVATQLDLEEALEASRYSSDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKRDGQCPEFNVEEQAICAVGLTISKPGVFVEAIQYLLILATPAELILVGVCSSGGADGMDPYAEISLQPLPEYTIASDGVTMTCITCTDKGRIFLAGRDGNIYELHYTSGSGWQKRCHKICLTSGLGSVISRWVVPNVFKFGAVDPIVEMIYDSERCILYTRTEEMKVQVFVLGSNGDGPLKKVAEERNLINQRNGTYGSRQSKGPRAMSRSTMPSIVCISLLSTLESKSIHLLAVLSDGRRMYLTTSSSNGSLGAYSSNHQTPSCLKVVATRPSPPLGVGGGLTFGANSISGRPQNEELLPKVETAFYSAGTLVLSDSSPPTISSLLLVSKDPVAQSSISGTSTLNARTSFALREIVSSLPVEGRMLFVADVLPLPDAAATMQSLYSQIEFGVSDFPDEHSEKAVGKLWARGDLSTQHILPRRRLVVFSTMGMMDIAFNRPVDILRRLFESNSPRSILEDFFKRFGAGEAAAMCLMLASRIVHCETLITNVIADKAGEAFEDPRIVGMPQLGGNTALSDTRTAAGGFSMGQVAQEAVPVFSGAHEGLCLCSSRLLFPLWELPVVAVKGISDSSTTHNGLVVCRLSAGAMQILEHKLRALEKFLRSRRNQRRGLYGCVAGLGDVAGSILYGSGSDLVSSDRNMVKSIFGTYTRNMESAGTGASNKRQRLPYSPAELAAMEVRAMECIRQLLLRSAEALFLLQLLSQHHLTRLVQGLDDSFRQAIAQLTFNQLVCSAEGDNLATRLISALMQYYTGPDGRGTVDDISGKLREGCPSYFKESDYKFFLAVECLERAAVTLDPMEKENLAREAFNCLSKIPESADLRTVCKRFEDLRFYEAVVRLPLQKAQALDPGGNAFNDQTDLATRERALSEREQCYEIIISALRSLKGDVSPKEFGSPMKPAASRSIPDMATRSKYICQIVQLGVQSPDKIFHDYLYRSMIDLGLDNELLEYGGPDLVPFLQNAGRHPIQEVRAVSALTAGASPIGQSGAVGATNEAKFFDLLARYYVMKRQHLLAAHVLLRLASRRSSDPGDVLTLEERCQYLSNAVLQAKNANSCKGLAGSTPDTLDNGLLEQLEGKLAVLRFQMKIKEELEALASRIEAVASTSDSVQNELIPDNDLAANSSIANMARQKAKELSLELKTITQLYNEYAVPFELWEICLEMLYFANYSSDGNTSIVRETWARLIDQALSTGGIAEACSVLKRVGFHIYPGDGAGIPLESLCLHLEKAALERSESGVESIGNDDVARALIAVCKGATEPVLNAYDQLLLNGAILPSPKLRLRLLQSVLVVLHEWAMSISSQTVGRSATAASLVLAGKYSLDQIATFNQGVRDKIASAANRYMTEVRRLALPQNQTEAIYRGFKELEESLGAFDM 1561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8663697 8678765 + ClCG07G005610.1 Cla07g00539 276527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00539 1561 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 952 1371 IPR007187 -
Cla07g00539 1561 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 79 1556 IPR004870 GO:0005643|GO:0006913|GO:0017056
Cla07g00539 1561 Gene3D - 607 957 - -
Cla07g00539 1561 Coils Coil 1312 1332 - -
Cla07g00539 1561 Coils Coil 1258 1278 - -
Cla07g00539 1561 Gene3D Nucleoporin, helical domain, central subdomain 1131 1233 IPR042537 -
Cla07g00539 1561 Pfam Nup133 N terminal like 130 584 IPR014908 -
Cla07g00539 1561 Gene3D - 1258 1520 IPR042538 -
Cla07g00539 1561 PANTHER BNAC05G49530D PROTEIN 79 1556 - -
Cla07g00539 1561 Gene3D - 968 1127 IPR042533 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00539 K14312 NUP155, NUP170, NUP157; nuclear pore complex protein Nup155 - csv:101212476 2737.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01503 Cla-Chr1:29544288 Cla07g00539 Cla-Chr7:8663697 6.39E-34 dispersed
Cla07g00539 Cla-Chr7:8663697 Cla09g01119 Cla-Chr9:12220573 1.29E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g495 . . . . . . Bma14g01933 Bma15g00028 . . . . . . . . . Bhi07g00386 . . . . . . Cla07g00539 Cam07g0580 Cec07g0641 Cco07g0607 Clacu07g0584 Cmu07g0619 Cre07g0955 . . . . Lsi04g01104 . . Cme10g01618 . . Bda07g01751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007657 2 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00539 Cla_Chr07 FPKM 6.545807 7.090136 25.597628 25.369825 10.43954 9.109737 10.011117 32.995449 31.983219 31.772375