Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00560 ATGCCTTCATCTCTCCCCCTCTCTCTCTTCCTCCTCCTCTTCACTTCAACCCTCCCGCCGCCGTCCATGGCAGCCCCCACCGGCGAGACGTCTTTCGTCTACGGCGGCTGTTCTCAGTCCAAATACACTCCGGGATCAACCATCGAGTCAAATCTCAACTCCCTCCTCACCTCTCTCCTCAACTCTGCCTCTTTCGCCCTCTACACAAACTTCACGGTCGCCGGCGGGGGTGACGGCGACACCGTGTACGGCCTGTACCAGTGCCGTGGCGACCTCGAAAACACGGCCTGCGCCAAATGCGTGACACACGCTGTGGCCCAGCTGGGGTCGTTATGCCTGGACGCGTGCGGCGGCGCGTTGCAGTTGGAGGGCTGTTTTGTGAAGTATGACAATGTGAGCTTTTTGGGAGTGGAGGACAAGTCGGTGGTGGTGAAAAAATGTGGGGCGATGATGGGGTATGATTCCGGCGGGTTGGCTAGAAGAGATGCTGTGTTGGCGTATTTGGCGGCCGCGGATGGCAGCGGTGGATATCGGCCGTTTAGAGTAGGTGGGTCTGGGGATGTTCAGGGGGTGGCGCAGTGCGTTGGGGATTTGGATGCTATGGAGTGTCAAGACTGTGTTGCTGCGGCGGTGGGCCGACTTAGGACGGACTGTGCCGCGGCGGGGTGGGGCGATGCTTTCTTGGGAAAATGCTATGCTCGGTTCTCACATGGCGGTGTTCGGCCCCATGGCAGTGGCAGTGGCGGTGGAGGAAATGATGGTAGAAACGACGACGTTGAGATTGAGAAGACATTGGCAGTAATAATTGGACTCATTGCTGGGATTGCTTTCATCGTTGTTTTCCTCGCTTTCCTAAGCCATTATTGTGACAAAAGAAAAGGTGGCAAATGA 891 56.9 MPSSLPLSLFLLLFTSTLPPPSMAAPTGETSFVYGGCSQSKYTPGSTIESNLNSLLTSLLNSASFALYTNFTVAGGGDGDTVYGLYQCRGDLENTACAKCVTHAVAQLGSLCLDACGGALQLEGCFVKYDNVSFLGVEDKSVVVKKCGAMMGYDSGGLARRDAVLAYLAAADGSGGYRPFRVGGSGDVQGVAQCVGDLDAMECQDCVAAAVGRLRTDCAAAGWGDAFLGKCYARFSHGGVRPHGSGSGGGGNDGRNDDVEIEKTLAVIIGLIAGIAFIVVFLAFLSHYCDKRKGGK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9060417 9064471 + ClCG07G005820.1 Cla07g00560 276548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00560 296 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 7 293 - -
Cla07g00560 296 PANTHER PLASMODESMATA-LOCATED PROTEIN 6 7 293 - -
Cla07g00560 296 Pfam Salt stress response/antifungal 37 131 IPR002902 -
Cla07g00560 296 Pfam Salt stress response/antifungal 180 236 IPR002902 -
Cla07g00560 296 Gene3D - 29 134 IPR038408 -
Cla07g00560 296 Gene3D - 159 238 IPR038408 -
Cla07g00560 296 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Cla07g00560 296 ProSiteProfiles Gnk2-homologous domain profile. 139 240 IPR002902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00560 - - - csv:101213591 496.508
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00633 Cla07g00560 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00829 Cla-Chr3:10816309 Cla07g00560 Cla-Chr7:9060417 1.43E-85 dispersed
Cla06g00047 Cla-Chr6:511099 Cla07g00560 Cla-Chr7:9060417 7.72E-56 dispersed
Cla07g00560 Cla-Chr7:9060417 Cla11g01011 Cla-Chr11:19869802 5.32E-19 dispersed
Cla07g00560 Cla-Chr7:9060417 Cla05g00411 Cla-Chr5:3712885 6.58E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g484 . . Bda01g01801 . Bpe13g01013 . . . Cmo04g01095 . Cma04g01018 . Car04g00953 Car04g00067 Sed06g0165 . Cpe01g01834 Bhi07g00378 Tan04g1527 Cmetu10g0773 Lac13g1367 Hepe01g0572 . . Cla07g00560 Cam07g0588 Cec07g0655 Cco07g0624 Clacu07g0591 Cmu07g0626 Cre07g0966 . . Cone6ag0373 Cone9ag0402 Lsi04g01110 . . Cme10g01607 . Blo11g00970 Bda07g01755 . . . Bma01g00483 . . . Cmo15g01022 . Cma15g00975 . Car15g00921 Cpe13g00352 . Bhi12g00934 . . . . . . Cla01g00633 Cam01g0661 Cec01g0653 Cco01g0679 Clacu01g0649 Cmu01g0623 Cre09g1881 Lsi09g00682 Csa05g01000 Chy09g00509 Cme09g01349
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010363 1 1 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00560 Cla_Chr07 FPKM 1.541026 3.078392 15.121557 15.016037 0.822443 0.0 0.223738 235.366104 240.600769 220.139496