Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00565 ATGGAGATGGATTTTTTGGGTTTGAGCTCTAAGGAGCCATTGGCTGTGGTGAAAGAGGAGATTGACAATGATGGAGCACAAGATTCTGGGTATACTAAAAGCTCTGGTGTTCCATGGTCCTCTAACAAGGCCTCTGCTCTTCCTCATCTGATGCCTTTCAAGATTTCTGCAGAGGACAAGACTTCAAAGCTTGGTTCTGATCCGGTCATGGGTACTTCAGATCAACGTGGAGCAGCCGAAATCCAGGTTGTTCTGTGTGGAAACCACATCTTGATTTCAGAAACGGTTAGGCGGTGTTTAGCTCATGGATTGGCTTATCCTATGCAACCTGATTTGTATTCGATTCATCGTCCTCACGAAGCAAAACTATTTTCAGTTCAAAATCAAGGTATATCTGTTTCCTTAGGCAATCCATCCTTGAAGAACCCTTTTACTCCTCCTGGTCAGATGGCTGGTTCTATCCTCAAACAACCACTTGGAGGAGTCCCTGTTTCGAGTGCTCCGAATTCGTTTTTCTCACCATTTGGTTCCATTGTTGGGATGACTGAACCATGGAATAGCATGAAACCTACTGGTGGGTCTCCAAATCAATTGACTATTTTTTATGGCGGTACCGTTAATGTCTACAATGACATTACCCCTGAAAAGGCTCAGGCTATAATGTTTTTGGCTGGGGCTGGGGCTGCTATATCCAACATTGCACATCCAAAAGCTCAAGCTCATGGAATGGGTGCAAAAATGGCTGCAGCAAGTGATGCTGCTCCTGTGAACCAGCCCGTAAGTGCCTTGCCTTGCCCTGCTCTCTCTAGCCCCTTGTCTGTTTCTTCTCACACGGGTGCCCAGTCTGCAAGTGGGTCAAGCTGCACTGATGAGTTGAGAGGAGCTAAAACCAATGGAGTTCCCACAACTCCTATCAGCAAAGTAGAGCCTCCAAGAATAGTCAATCCGGTCGGATCTGTCACTGCTAGTGCTATGATGCCATCTGCTGTTCCACAGGCTCGTAAGGCATCCTTAGCTCGGTTTTTGGAGAAGCGCAAGGAGAGGGTAATGAGCTCTGCTCCATACAATCTTAGCAAGAAATATCCCGAGTGTGCTGCGACAGAATCCAACGGCGCAAATTTCTCGAGTTCTATCATGGGCAACAGCGCTAATGTCGCAAGCTAA 1164 46.91 MEMDFLGLSSKEPLAVVKEEIDNDGAQDSGYTKSSGVPWSSNKASALPHLMPFKISAEDKTSKLGSDPVMGTSDQRGAAEIQVVLCGNHILISETVRRCLAHGLAYPMQPDLYSIHRPHEAKLFSVQNQGISVSLGNPSLKNPFTPPGQMAGSILKQPLGGVPVSSAPNSFFSPFGSIVGMTEPWNSMKPTGGSPNQLTIFYGGTVNVYNDITPEKAQAIMFLAGAGAAISNIAHPKAQAHGMGAKMAAASDAAPVNQPVSALPCPALSSPLSVSSHTGAQSASGSSCTDELRGAKTNGVPTTPISKVEPPRIVNPVGSVTASAMMPSAVPQARKASLARFLEKRKERVMSSAPYNLSKKYPECAATESNGANFSSSIMGNSANVAS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9311258 9314019 - ClCG07G005870.2 Cla07g00565 276553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00565 387 MobiDBLite consensus disorder prediction 274 293 - -
Cla07g00565 387 Pfam Jas motif 331 355 IPR018467 -
Cla07g00565 387 ProSiteProfiles Tify domain profile. 191 226 IPR010399 -
Cla07g00565 387 SMART tify_2 191 226 IPR010399 -
Cla07g00565 387 MobiDBLite consensus disorder prediction 274 313 - -
Cla07g00565 387 Pfam tify domain 194 225 IPR010399 -
Cla07g00565 387 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 378 IPR040390 -
Cla07g00565 387 PANTHER PROTEIN TIFY 7 13 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00565 K13464 JAZ; jasmonate ZIM domain-containing protein - csv:101213109 646.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01035 Cla-Chr4:25523758 Cla07g00565 Cla-Chr7:9311258 1.11E-45 dispersed
Cla05g01757 Cla-Chr5:29404550 Cla07g00565 Cla-Chr7:9311258 6.51E-06 dispersed
Cla07g01375 Cla-Chr7:30885294 Cla07g00565 Cla-Chr7:9311258 4.21E-06 dispersed
Cla07g00565 Cla-Chr7:9311258 Cla09g00102 Cla-Chr9:1039353 7.54E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g480 . . . . . Bpe10g00980 . . Cmo04g01093 . Cma04g01015 Cma04g00070 Car04g00951 Car04g00065 . . . Bhi07g00375 Tan04g1530 . Lac13g1371 Hepe01g0565 . . Cla07g00565 Cam07g0591 Cec07g0659 Cco07g0630 Clacu07g0595 Cmu07g0628 Cre07g0968 . Cone19ag0746 Cone6ag0376 Cone9ag0405 Lsi04g01112 . . . Blo06g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001064 2 5 0 2 2 2 4 2 2 1 2 2 4 2 2 4 2 5 4 2 2 2 2 2 2 2 2 11 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61400 PF06200 tify 1.10E-16 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00565 Cla_Chr07 FPKM 19.022774 21.072086 33.319347 32.700912 8.768533 8.370538 7.764092 11.338363 13.399057 11.978021