Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00570 ATGGCTACGCTTCAGACATGGAGGAAAGCCTATGGCGCTCTCAAGGATTCTACCAAAGTCGGCCTTGCCCATGTCAACAGCGATTACGCGGATTTGGATGTCGCAATAGTCAAAGCTACTAACCACGTCGAGTGCCCGCCCAAGGAGAGACACCTCAGGAAAATTCTGATTGCTACATCTGCAATTAGACCTCGTGCTGATGTTGCTTATTGCATTCATGCCCTTGCTCGTCGCTTGTCCAAGACTCGGAATTGGACGGTAGCTTTGAAAACATTAATAGTCATACATAGGACCTTGAGGGAGGGCGATCCAACATTCAGGGAGGAACTTTTGAATTTTACACAAAGAGCTCGAATTCTTCAACTGTCTAATTTTAAGGATGATTCAAGCCCAATTGCTTGGGATTGCTCTGCATGGGTACGTACATATGCATTGTTTTTAGAGGAGCGTCTCGAATGTTTCAGGATACTTAAGTATGACATTGAATCTGAACGCCTGCCAAGACCTGCCCAAGGTCAGGATAAGGCAGCAAGCCAAGGCAAAGGCCTAATGAGGATGGTTGGGGGCGAGGCTGAGGCGTGGTTTGCAACGAGGCTGAGGAGTCCGGTTGCAGCATTAATAGAAGAGCAAAACTCCGGTCAAATCCCACTCGTTTCTGATGGTACTAAGCCGCCGGAGTCAGATGATCCGTCGGAGAAGAAGAACAAAGAAACCTGGTCCAATGTGAACACTAGGGAGGGTGACGAAAAGGCAGAATCATTATGGAAAGAGAAGATTGAAGGTTGTAGTGTGAATGCAGGGGAGAAAAACGAAGAGTCCTTAGTGTTGAGGAAAGAAAATTTGGTCGGCTGCTCACTCTATGAATTAAATTCCCTCGTCGAGTCTGCTGGTATTCCCTGCGAAGAAAAAGAGGAGTTAATTGATGGTTGCTCTCCCTCCAACAAATTAAATTCGATCAATAGTTGCCTTCACCAAGGATCCATCTCCCCGAAACAGTTCAATGTGAAACCAAGTGAGGAGGTAGCCGACAAGCAATCAATGAAGGAACTTAATTCGGAAGTCCCCTCGGTTTCCATAAAACACTTCGACTTCCTGTCAACTAACCTGAATATTAATCAGGAAGTTTTGCGCTCGTGGCTGCAGAAGAAAGACAGCCAGCCGACTTTGCCAACTAGCAGTCTTCACCGTTTCATAATCCACAGAAAGGGAAGCAACCCCACTCCACCAATGACAACTCAGCTGAAGTTCTCTCTCCCTCCAAAATCCCAAAAGTCGGGAAAGTCAAGGGATACAGCAGAACCAGGGAACTGGACTGTGAAGAACTGTTGGAACATTTGCCTGCTTTGCAACAGCTGTTGTATCGTCTTATTGGCTGCAGGCCAGAAGGAGCAGCTATTGGGAATTATGTTATACAGTACGCCCTGGCACTGCCGCCCCTTTGGCACTGGCAAAGTCTTTCAGCAAGAAGTCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATAAGAAAGAAGAGGCCACAAGAGTAAGAGATCACTGGTCAATTGATCTTTTTACTAGTGTCTATGTGTGGTATGCCGTGGCTGGAAGCCTATCAGATTTCTATGATATTTGCAAAGGGTTAGAACTTGCTCGGAATTTCCAGTTTCCTGTTTTAAGAGAGGTAATGATGCCTCCACAGTCATTCCTTAATACGATGGAAGAGTATATTAGGGAGGCACCACGAATGGTTACAGTACCAAATGAACCACTGCTGCAACTTACCTACAAGCCAGAAGATTCTCTTTCCGAGGATCAAAACTTACCCACTGATCAGCCGGAGGCTTCTCCTTCAGATGATCTTTCTATTACTCCTGTTGAAACGGCTCCACCACCACCTCCAGCACCAGCTCCTGCTCCTGAAAGCCATGCAGAGACTGGAGATTTATTGGGATTGAGTCTTGCTACCACTGAAGTATCTGAAATTGAGGAGAGAAATGCTTTGGCTTTAGCTATAGTTCCTTCTGGTGATACAGCAACACCCACTTTTCATTCCAATGGTGCACATACAAATGATTTCGATCCTACTGGTTGGGAGCTTGCCTTGGTCACCACTCCAAGTAGTAACCTTTCATCAACTAATGAGAGACAACTGGCTGGTGGATTGGACACACTTACTCTCGATAGCTTATATGATGAAGGTGCATATAGAGCTTCTCTACAGCCCGTGTACGGTAAGCCCGCACCAAATCCGTTTGAGGTGCAAGATCCGTTTGCATATTCGAACGCCATTGCTCCACCTCCATCAGTTCAAATGGCACCACTACCTCAGCAGCAGGCCAATCCTTTTGGTCCTTTTCAACCTACCTTCCCACAGCAGCAACAGCCCTTTTCAATGGACCCAACAAATCCTTTTGGTGATGCAGGTTTTGGAGCATTCCCTGCTCCTAACCACCATACTGTACCACCGCCTGCAAGCAACCCGTTCGGAAGCACAGGCCTGCTGTAG 2535 46.67 MATLQTWRKAYGALKDSTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSAIRPRADVAYCIHALARRLSKTRNWTVALKTLIVIHRTLREGDPTFREELLNFTQRARILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIESERLPRPAQGQDKAASQGKGLMRMVGGEAEAWFATRLRSPVAALIEEQNSGQIPLVSDGTKPPESDDPSEKKNKETWSNVNTREGDEKAESLWKEKIEGCSVNAGEKNEESLVLRKENLVGCSLYELNSLVESAGIPCEEKEELIDGCSPSNKLNSINSCLHQGSISPKQFNVKPSEEVADKQSMKELNSEVPSVSIKHFDFLSTNLNINQEVLRSWLQKKDSQPTLPTSSLHRFIIHRKGSNPTPPMTTQLKFSLPPKSQKSGKSRDTAEPGNWTVKNCWNICLLCNSCCIVLLAAGQKEQLLGIMLYSTPWHCRPFGTGKVFQQEVVDTLLDNGIRGQPMRDGHNKVYKSFSDKKEEATRVRDHWSIDLFTSVYVWYAVAGSLSDFYDICKGLELARNFQFPVLREVMMPPQSFLNTMEEYIREAPRMVTVPNEPLLQLTYKPEDSLSEDQNLPTDQPEASPSDDLSITPVETAPPPPPAPAPAPESHAETGDLLGLSLATTEVSEIEERNALALAIVPSGDTATPTFHSNGAHTNDFDPTGWELALVTTPSSNLSSTNERQLAGGLDTLTLDSLYDEGAYRASLQPVYGKPAPNPFEVQDPFAYSNAIAPPPSVQMAPLPQQQANPFGPFQPTFPQQQQPFSMDPTNPFGDAGFGAFPAPNHHTVPPPASNPFGSTGLL 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9682631 9712162 + ClCG07G005930.2 Cla07g00570 276558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00570 844 MobiDBLite consensus disorder prediction 225 251 - -
Cla07g00570 844 SMART enth_2 30 161 IPR013809 -
Cla07g00570 844 PANTHER OS05G0549000 PROTEIN 542 825 - -
Cla07g00570 844 PANTHER OS05G0549000 PROTEIN 1 182 - -
Cla07g00570 844 Gene3D - 7 161 IPR008942 -
Cla07g00570 844 PANTHER CLATHRIN ASSEMBLY PROTEIN 542 825 IPR045192 GO:0048268|GO:0072583
Cla07g00570 844 MobiDBLite consensus disorder prediction 405 433 - -
Cla07g00570 844 MobiDBLite consensus disorder prediction 789 844 - -
Cla07g00570 844 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 182 IPR045192 GO:0048268|GO:0072583
Cla07g00570 844 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Cla07g00570 844 MobiDBLite consensus disorder prediction 400 433 - -
Cla07g00570 844 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Cla07g00570 844 MobiDBLite consensus disorder prediction 789 810 - -
Cla07g00570 844 MobiDBLite consensus disorder prediction 609 654 - -
Cla07g00570 844 MobiDBLite consensus disorder prediction 609 632 - -
Cla07g00570 844 MobiDBLite consensus disorder prediction 214 251 - -
Cla07g00570 844 CDD ANTH_N 32 154 - -
Cla07g00570 844 Pfam ANTH domain 31 174 IPR011417 GO:0005543
Cla07g00570 844 Pfam ANTH domain 545 588 IPR011417 GO:0005543
Cla07g00570 844 MobiDBLite consensus disorder prediction 635 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00570 - - - csv:101205968 533.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00570 Cla-Chr7:9682631 Cla11g01149 Cla-Chr11:23948453 6.35E-42 dispersed
Cla07g00570 Cla-Chr7:9682631 Cla05g01735 Cla-Chr5:29164913 2.70E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g460 . . . . . . . . Cmo04g01091 . Cma04g01013 Cma04g00065 Car04g00949 Car04g00062 . . . . . . . . . . Cla07g00570 Cam07g0596 Cec07g0663 Cco07g0636 Clacu07g0599 Cmu07g0633 Cre07g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01148 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001235 1 2 1 3 2 3 4 3 2 2 2 2 3 1 2 4 3 4 4 3 2 2 2 2 3 3 2 6 2 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00570 Cla_Chr07 FPKM 15.837696 16.137175 19.128712 19.966726 37.552586 36.96236 37.592754 0.0 0.0 0.0