Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00577 ATGGCATCCGCCACATTGAGCACTTCAATACCAACAAGAGGAGACTCATTTTCAAATTTGATTTCAAACGGACTCTTAAATTCCAAAGTGATTAATTTTTCCTTTCTAAAACGTGTCGCCCCACGAGGGGTGGCGGCAACGGTTAGGTCGACGTGGAGGACGGCGGAGCACGGTGGAGCATTGGCGACGGAGGAGGATGAGGAGATGGGCAGGATCCGGCGGCTGCAGAACGGGTCGGACGTGAGAGGGGTGGCGATCGAGGGGGAGAAAGGGAGGGCGGTGGATTTGACGGCGGCGGCGGTGGAGGCAATAGCAGAGAGTTTCGCGGAGTGGGTGATTGAGGAGTTGGAAACAGGGCGGCGCGTGAGTGTTTCGGTGGGGAGAGACCCTAGAATTTCCGGCGGTGCTTTGAGTGTTGCAGTGTTCGCGGGAGTTAGTAGGGCGGGGTGTTTGGTGTTTGATATGGGACTTGCCACAACGCCGGCGTGCTTCATGAGCACCGTTTTGCCTCCTTTTTCTTATGATGCTTCCATCATGTTAACAGCATCGCACTTACCTTATACACGAAATGGGATGAAGTTCTTCACGAAGAGAGGAGGGCTAAGCTCGCCGGAGGTCGAGGAGATATGCGACAGAGCCGCCGTGAAGTACGCTAACAGAGTGGTCAAAGTCTCCACTCTTCTCCGAACGCCGCCGTCCAAGGTGGATTTCATGGCGGCTTATTCACAGCATCTCAGAGATATCATTAAGCAAAGAATCAATCATCCTTTGCATTATGATACTCCTCTCATAGGATTTCAGATAATAGTGAACGCGGGCAACGGATCGGGAGGCTTCTTCACATGGGATGTCTTGGACAAGCTGGGCGCAGACACCTTTGGCTCTCTTCATCTCAACCCAGACGGCATGTTCCCCAACCACATCCCTAATCCAGAAGACAAAACCGCCATGTCACTCACTCGAGCCGCCGTCCTCGAACATGGAGCCGACCTTGGTGTCGTCTTCGACACTGACGTTGACCGCAGTGGCGTCGTCGATCATGAGGGCAACCCAATCAACGGCGACAAGCTCATTGCCCTAATGTCGGCCATCGTACTCCGAGAGCACCCTGGCACGACCATCGTCACCGACGCCCGCACCAGCGTCGCCCTCACAAAGTTCATCACCAACCGAGGTGGGCAACATTGTCTCTACCGCGTCGGGTATCGGAATGTCATCGACAAAGGAATCCAACTCGACGCGGACGGAATCGAGACGCATCTCATGATGGAGACGTCGGGGCACGGGGCACTTAAGGAGAATTATTTTTTGGATGATGGAGCTTACATGGTAGTGAAGATTATCATTGAAATGGTGAGAATGAAGTTAGAGGGATCAGATGAAGGAATTGGGAGTCTTATAAAAGATCTTGAAGACCCATTGGAGTCTGTGGAATTGAGATTGAATGTGATCTCTGAGCCAAGTTTTGCAAAAGAGAAGGCTGTGGAGGCCATTGAGACATTCAGAAACTTTGTCCAGGAAGGGAAGCTTGAGGGATGGGAACTGGACTCATGTGGAGATTGTTGGGTGCATGAAGGTTGCTTGGTGGACTTAAATGACCATCCCAAGCCAATTGATGCACAAATGTACAGGGTTAAAGTATATGATAAGGAAAATGGGGAAGTTGGTTGGGTACACTTGAGGCAGAGCATTCACAATCCAAACCTTGCTTTGAATATGCAATCATCTCTGCCCGGAGGCTGCCTCCAAATCACTAGAGACTTTAGAGATAAAACACCACTTTGGACACCTGGCACTACCCCTTGGATGCCTAGAGCTTCCTTTGGATGCCTGGTCTACTGTGTTGGATGCCCAACTCACTCTGTTGGATGCTTGACAGTGCTTGGATGCCTAGCTCACACTAATGGACGCCTAATAAGATGTTTTGGGCGCCTGACAGCTTGCTGA 1947 51.31 MASATLSTSIPTRGDSFSNLISNGLLNSKVINFSFLKRVAPRGVAATVRSTWRTAEHGGALATEEDEEMGRIRRLQNGSDVRGVAIEGEKGRAVDLTAAAVEAIAESFAEWVIEELETGRRVSVSVGRDPRISGGALSVAVFAGVSRAGCLVFDMGLATTPACFMSTVLPPFSYDASIMLTASHLPYTRNGMKFFTKRGGLSSPEVEEICDRAAVKYANRVVKVSTLLRTPPSKVDFMAAYSQHLRDIIKQRINHPLHYDTPLIGFQIIVNAGNGSGGFFTWDVLDKLGADTFGSLHLNPDGMFPNHIPNPEDKTAMSLTRAAVLEHGADLGVVFDTDVDRSGVVDHEGNPINGDKLIALMSAIVLREHPGTTIVTDARTSVALTKFITNRGGQHCLYRVGYRNVIDKGIQLDADGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMKLEGSDEGIGSLIKDLEDPLESVELRLNVISEPSFAKEKAVEAIETFRNFVQEGKLEGWELDSCGDCWVHEGCLVDLNDHPKPIDAQMYRVKVYDKENGEVGWVHLRQSIHNPNLALNMQSSLPGGCLQITRDFRDKTPLWTPGTTPWMPRASFGCLVYCVGCPTHSVGCLTVLGCLAHTNGRLIRCFGRLTAC 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9867680 9877115 - ClCG07G006020.2 Cla07g00577 276565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00577 648 PANTHER OS06G0476200 PROTEIN 51 592 - -
Cla07g00577 648 Gene3D - 267 345 - -
Cla07g00577 648 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 240 349 IPR005845 GO:0005975
Cla07g00577 648 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 74 215 IPR005844 GO:0005975|GO:0016868
Cla07g00577 648 SUPERFAMILY Phosphoglucomutase, first 3 domains 79 249 IPR016055 GO:0005975|GO:0016868
Cla07g00577 648 SUPERFAMILY Phosphoglucomutase, first 3 domains 353 455 IPR016055 GO:0005975|GO:0016868
Cla07g00577 648 PRINTS Phosphoglucomutase/phosphomannomutase family signature 265 284 IPR005841 GO:0005975|GO:0016868
Cla07g00577 648 PRINTS Phosphoglucomutase/phosphomannomutase family signature 300 313 IPR005841 GO:0005975|GO:0016868
Cla07g00577 648 PRINTS Phosphoglucomutase/phosphomannomutase family signature 329 344 IPR005841 GO:0005975|GO:0016868
Cla07g00577 648 PRINTS Phosphoglucomutase/phosphomannomutase family signature 176 190 IPR005841 GO:0005975|GO:0016868
Cla07g00577 648 Gene3D - 76 224 - -
Cla07g00577 648 PANTHER PHOSPHOHEXOSE MUTASE 51 592 - -
Cla07g00577 648 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 353 453 IPR005846 GO:0005975|GO:0016868
Cla07g00577 648 CDD PMM_PGM 75 590 - -
Cla07g00577 648 Gene3D - 346 468 - -
Cla07g00577 648 SUPERFAMILY Phosphoglucomutase, first 3 domains 240 351 IPR016055 GO:0005975|GO:0016868
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00577 - - - csv:101207539 1078.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00577 Cla-Chr7:9867680 Cla08g00765 Cla-Chr8:19997455 3.15E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00577 Cla_Chr07 FPKM 13.207018 13.923407 18.33708 16.038536 10.75439 11.534231 12.852136 14.392355 15.08344 13.735101