Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g00578 | ATGAACAATCGGGCTGGACTCCTTCGAATTCGCCTGCTTCGAGGCCACAATCTCGCCATTCGCGATGCTCCAACTCGTAGCAGCGATCCCTACGTCGTCATCTCCTGCGCTAACCAGAAATTCAAATCTCGCGTGGTGAAGAAAAACTGCAATCCAGAATGGAACGAGGAATTCACATTTTCGATTACAGATGTCAACACGGCAATCAAATTGGCAGTGTTCGACAAAGATAGATTCACAAAGGACGATGGAATGGGGGATGCGGAGATCGACATAAAACCGTACATAGAGTGTTTGAATATGGGGTTAGAGAATCTGCCAAATGGTTGTGTGGTGAAAAGGGTTCAACCAAGCAGATCAAACAGCCTTGCAGATGAGAGTTCTTGTGTTTGGAACGATGGTAAGATCATCCAAGACATGACTCTCAGATTGCAGAATGTTGAATGTGGTGAAATCATGATTCAGCTTCAGATGTTCAATGTTTCGATTTTCAAAGGCCTAAGAACCTACTCTTTAGCCTGA | 522 | 44.64 | MNNRAGLLRIRLLRGHNLAIRDAPTRSSDPYVVISCANQKFKSRVVKKNCNPEWNEEFTFSITDVNTAIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLENLPNGCVVKRVQPSRSNSLADESSCVWNDGKIIQDMTLRLQNVECGEIMIQLQMFNVSIFKGLRTYSLA | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 9925592 | 9927111 | - | ClCG07G006030.1 | Cla07g00578 | 276566 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g00578 | 173 | Pfam | C2 domain | 6 | 94 | IPR000008 | - | |
| Cla07g00578 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 108 | IPR000008 | - | |
| Cla07g00578 | 173 | SMART | C2_3c | 7 | 104 | IPR000008 | - | |
| Cla07g00578 | 173 | Gene3D | C2 domain | 2 | 165 | IPR035892 | - | |
| Cla07g00578 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 163 | - | - | |
| Cla07g00578 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
| Cla07g00578 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 4 | 161 | IPR035892 | - | |
| Cla07g00578 | 173 | CDD | C2_ArfGAP | 6 | 150 | - | - | |
| Cla07g00578 | 173 | PRINTS | C2 domain signature | 24 | 36 | IPR000008 | - | |
| Cla07g00578 | 173 | PRINTS | C2 domain signature | 48 | 61 | IPR000008 | - | |
| Cla07g00578 | 173 | PRINTS | C2 domain signature | 69 | 77 | IPR000008 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00614 | Cla-Chr1:7017547 | Cla07g00578 | Cla-Chr7:9925592 | 2.58E-78 | dispersed | |
| Cla06g01419 | Cla-Chr6:27743172 | Cla07g00578 | Cla-Chr7:9925592 | 1.14E-61 | dispersed | |
| Cla07g00578 | Cla-Chr7:9925592 | Cla05g02675 | Cla-Chr5:37929342 | 4.80E-31 | dispersed | |
| Cla07g00578 | Cla-Chr7:9925592 | Cla04g01044 | Cla-Chr4:25616339 | 4.72E-63 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g00578 | - | - | csv:101205028 | 321.242 |