Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00588 ATGGCTGGAGATATCGAGCAGCCGTTTACCTTTAATTTTCAGGTAGAGTCTGCAATCTCAGACTCCATATCATTTGGAAGGTTTGAAAAAGAATCTTTATCTTGGGAAAGGAGGTCATCATTCTCTCATAATCGTTATCTAGAAGAGGTAGAGAAATTCTCCAAACCGGGTTCAGTCAATGAGAAAAAGGCTTACTTTGAGGCTCATTTCAAGAAAAAGGGAGGATTGCTTGGTCAGAATTCGGCAGAGTCCCATACAATTGAGAATGATGTACCAGAGCTAGTGAATCAAGAGGCAGAAGTTGAGATTATAAACATGGAGAATCATGACGGCCATTTTGATGATAGCTCTGTCAGTTCACAAGACCATGGGGACCATTTGGTGACAAAATTTGAAGAAATGCCAAAACATGGAATTTCAGCTCCTAATCCTAAATTTGAAAATTCTTTCAGCAGCGTTGTTAATGCTGAAATAAATGAACAAGATGACACTGGGGAGAACAAGTTCTCAACTTTTGTAAGTGATGAACCAGAGGTTGAAATAAATCAAGATGCCAAGAGTCATGGAATGAGTGAGAATATGCAACCTAAAGCCATGGAGGCAGTCCCCAAAACTGAACTAGTGAAGAAAGCTGGCAACAACTGCTCAGGAAGTCAGCAAACTCTCGCTTCAAAGATGATTTCTAGAAGGCAAACAAAGGCCTCCTCCAGATCTCAGGCTAGTATTCATCAGAGTCCAAGAAATTTCTCGGGTGATGTTCTCAAATCCAGTAAAAGCAAAGGCGAGCCTTCACATACAACTTGCACAGAAGCTCATCCATCAAAAACTGCCATTTCTCGTGCAAATGCTGTCCGTCGAATACCCAAAGTTGAGGATTCTAAAGTTCTCAAGGGAAGAACTATTCTCGAGAGTAGAAGATGCAGTGGTGAGAAGGTACAAACTTCTGGAGTATTATATTCTTCTCCGTCGAAGCTCGAGTCTAGATCATATTTAAAGACAACCACCAGGCAAAGTCGGCCTGTCAACTCAGCCATGCAAGATACAGGGAAAAGTGCTTCAGCTTCAAATAGAACGGGCTTGGCAGAAAGGAGAAAACAGGCAAGCATAATCTCTAGCAAGCCAGATTCTGAAATGAAGAAATTACAGAAAAACGTTGACATCAGATCAAAACCAATACCGTCTTCTTATGGTGCAGTTCGACCAGAGTCAGATGGGAAGAAGTACTTTTGTCCAACAAATGATTGGGCTGTGTTTAGTGGTACCAAAGCAAGAAACACTTTAAGGAAGTCCACAGTTATGGCATCGTCCTTGCATTCGCAGTTAGGAAAAGACATTGATTCCTCTGCAAGGGAAGCACCATATACTTCAAAAAACATGAGCTACCACGCAGGCGTGCATGTTCAAGCAAGCAGTAATTCGTTGAGTTCATCAGCCAACCACCAAGAAACCGAAAACAAGAGAAGGAAGGACAAAACGAAGGAGAAAGAACCCAATGTACAGCAACCCCGAATTTTGGAGAATTATAAGACGACATCCAAAAAAGGAAGCGAGGGGAGGCAGAAAGTCGGGGCGCAGAGAAGCATGAATTTGATGGGGAGATCGAGGGACGTTAAGGGTGTTGCTGGCTCCGGAATGGGACGACTTGCTGTTGGTGTTACGTCGTAA 1665 42.7 MAGDIEQPFTFNFQVESAISDSISFGRFEKESLSWERRSSFSHNRYLEEVEKFSKPGSVNEKKAYFEAHFKKKGGLLGQNSAESHTIENDVPELVNQEAEVEIINMENHDGHFDDSSVSSQDHGDHLVTKFEEMPKHGISAPNPKFENSFSSVVNAEINEQDDTGENKFSTFVSDEPEVEINQDAKSHGMSENMQPKAMEAVPKTELVKKAGNNCSGSQQTLASKMISRRQTKASSRSQASIHQSPRNFSGDVLKSSKSKGEPSHTTCTEAHPSKTAISRANAVRRIPKVEDSKVLKGRTILESRRCSGEKVQTSGVLYSSPSKLESRSYLKTTTRQSRPVNSAMQDTGKSASASNRTGLAERRKQASIISSKPDSEMKKLQKNVDIRSKPIPSSYGAVRPESDGKKYFCPTNDWAVFSGTKARNTLRKSTVMASSLHSQLGKDIDSSAREAPYTSKNMSYHAGVHVQASSNSLSSSANHQETENKRRKDKTKEKEPNVQQPRILENYKTTSKKGSEGRQKVGAQRSMNLMGRSRDVKGVAGSGMGRLAVGVTS 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10392276 10396445 + ClCG07G006150.2 Cla07g00588 276576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00588 554 MobiDBLite consensus disorder prediction 481 500 - -
Cla07g00588 554 MobiDBLite consensus disorder prediction 212 274 - -
Cla07g00588 554 PANTHER PROTEIN WVD2-LIKE 7 22 554 - -
Cla07g00588 554 MobiDBLite consensus disorder prediction 328 362 - -
Cla07g00588 554 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 22 554 IPR044216 -
Cla07g00588 554 MobiDBLite consensus disorder prediction 468 541 - -
Cla07g00588 554 MobiDBLite consensus disorder prediction 328 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00588 - - - csv:101208552 790.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00588 Cla-Chr7:10392276 Cla09g01910 Cla-Chr9:36751868 2.03E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g418 . . . . . . . . Cmo04g01083 . Cma04g01004 . Car04g00941 Car04g00058 . . . . . . . . . . Cla07g00588 Cam07g0614 Cec07g0681 Cco07g0662 Clacu07g0623 Cmu07g0648 Cre07g0994 Cone13ag0767 Cone19ag0770 . . Lsi04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01034 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00588 Cla_Chr07 FPKM 0.227854 0.342629 0.304975 0.283018 0.0 0.0 0.0 0.575163 0.502216 0.443814