Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00596 ATGGCGCCCATTAATCGCTCTCTAATTCTCCTCTTCATCCTTCTCCAATTGTTCCTCTCGCAAACCCTAGCTCGAAAACCCCACATCATCGATTTCCGATCCCCAAATCTCTACCCGGAGGGCCTCGTTTGGGACCCATCCGCCCAGCATTTCGTCGTCAGCTCACTCCACCACCGCACTCTCGTCTCTGTCTCCGACGCCGGCGTCGCCGAAACCTTAATCCACGATCCCAACCTCCCCGAAAACGTCTCCATCTTAGGCCTTGCCATCGATTCAGTCAACAATCGACTCCTCGCCGCCGTCCACGCTGCCCCACCTCTCCCGGCATTCAACGCCCTCGCCGCCTACGATCTCCGATCCCGCCGTCGCATCTCCCTTACTCCTCTCCCCTCCGATGGAACCTCCAGTCCCCGCCCAGTCGCGAACGCCGTTGCGGTCGACTTCAAGGGTAACGCCTTCGTCACGAACTCCGCCGGAAACTTCATCTGGAAGGTTGATAAAGACAGATCTGCCTCGATCTTCTCGAAATCGGCGAGTTACAGTTCCTATCCCGCAACTCCGAACGAAGTTTACTCGTCGTCAGGGCTAAACGGTGCCGTTTACGTGAGCAAAGGGTACCTTCTGGTGGTGCAATCGAACACCGGAAAGATGTACAAAGTGGACGCTGACGACGGAACGGCGAGGCTGGTTTTGCTGAACAAAGAATTGAAAGGGGCGGACGGGATAGCGGCGAGAAGAGACGGCGTCGTTTTGGTGGTCTGTTACAAAAAGCTGTGGTTCTTGAAGAGCGAGGATAGTTGGGGGGAGGGGGTGGTTTATGACGAAATTGACCTCGATGAAGAGAAGTTTGCTACTGCTGTAACTGCGGGGAATGAGGGGAGGGTGTATGTGCTGAATGGATATGTCAATGAGTGGTTAAATGGTAATTTGGGAAGGGAGATGTTTGGGATTGAAGAAATGAGGCAAGCAGACGCCGGAACATCGCACACTACCGGTGACTCTAGAGAAGGTTCTGAAGGAGATTCTAGTAACCCTCAGGTAAATATGAAAGATCAAATATTTAATAGGATAGCCCAGAGGTTGGCATCCAATGTTGAAACGGCTCAGGGAGATCCCGAGAGGAAGTATAAGATCGAGAGGTTCAAAGCCTTAGGTGCCCAGATATTTGAGGGTACTACGAATCCTGCAGATGTCAAAATGTGGCTAAACCAGATAGAGAAATGCTTTAGGGTCATGCACTGTCCTGAAGAGAGGAAGCTAGAGGCTGAGGAGACTCTAGACGTGGTGACTATAAAGCCTAGAAAATGGTTGAGTAAAGGGTGTGAAGCGTACCTGGCATATGTCAGAGAATCTGATGTACCTAAGACGACATTTAGAACGAGATATGGACATTACAAGTTTTTGGTAATGCCGTTTGGATTGACATATGCACCAGCAGCATTTATGGACCTTATGAAGAGGATATTTCATCCTTATTTGGATCAATTTGTTATAGTATTCATAGATGATATTCTGGGTAAGTGTGAGTTTTGGTTGGAACAAGTGGTGTTTCTAGGCCATGTGGTGTCAGCAACTAGAGTTAGCGTAGATCCTCAAAAGACTGAAGTCGTGGTAAAGTGGGAACGACTTAAGACTATAATGGAGCTAAGACCCCACGAGAACAATTACCCTACTCATGAATTGGAATTAGCATTAAAGATATGGCGACATTATTTATTTGGGAAAAAGTGCTATATCTATACGGATCATAAGAGTCTTGAGTATATCTTTGATCAAAAGGAGCTTAACATGAGGCAAAGGAGGTGGTTGGAATTGATCAAAGATTACGATTGTACTATTGAGTATCACCTAGGTCAAGCAAATGTAGTCGCTGATGCTTTAAGTCGGAAATCCGGGGGTGGTATAAGTTCTTTAAGTGTTATGAAGGTTACTCTACTCAAAGAATTTCAAAGTGGTGTTACTACGTTAGGTGTAACCGGTGATGGAGCATTGTTGACACATTTCCAACTGAGGCCTAAATTAGTTGATAAAGTAATAAATAAGCAATTGAAGGATCCTGAAATTAGGAAACTCAAAGACGAAGTAAAGGCCCAACAAAGGATAGATTTTGAGCAAGTTAAGCCTGAACAGCAAAAGCTAGCCGGATTGCTAAATCCACTCCCTGTAACTGAATGGAAGTGGGAGTATGTCACCATGGATTTTCTATTTGGGTTGCTAAAGACTTCAGCAGAAGTTGATGGAATTTTGACGGATGGACAGTCTGAAAGGACTATACAAACCTTGGAAGACATGCTTTGGGCATGTGCTTTGCAAGTTAAAGGTAGCTGGAATGAGTATTTATCATTGATGGAGTTTGCTTACAATAATAACTACCAGTCAAGCATAGGTATGGTTTCGTATGAAGCTTTGTATGGTAGAATGTGTAGAACTCCAGTGTGTTAA 2442 45.95 MAPINRSLILLFILLQLFLSQTLARKPHIIDFRSPNLYPEGLVWDPSAQHFVVSSLHHRTLVSVSDAGVAETLIHDPNLPENVSILGLAIDSVNNRLLAAVHAAPPLPAFNALAAYDLRSRRRISLTPLPSDGTSSPRPVANAVAVDFKGNAFVTNSAGNFIWKVDKDRSASIFSKSASYSSYPATPNEVYSSSGLNGAVYVSKGYLLVVQSNTGKMYKVDADDGTARLVLLNKELKGADGIAARRDGVVLVVCYKKLWFLKSEDSWGEGVVYDEIDLDEEKFATAVTAGNEGRVYVLNGYVNEWLNGNLGREMFGIEEMRQADAGTSHTTGDSREGSEGDSSNPQVNMKDQIFNRIAQRLASNVETAQGDPERKYKIERFKALGAQIFEGTTNPADVKMWLNQIEKCFRVMHCPEERKLEAEETLDVVTIKPRKWLSKGCEAYLAYVRESDVPKTTFRTRYGHYKFLVMPFGLTYAPAAFMDLMKRIFHPYLDQFVIVFIDDILGKCEFWLEQVVFLGHVVSATRVSVDPQKTEVVVKWERLKTIMELRPHENNYPTHELELALKIWRHYLFGKKCYIYTDHKSLEYIFDQKELNMRQRRWLELIKDYDCTIEYHLGQANVVADALSRKSGGGISSLSVMKVTLLKEFQSGVTTLGVTGDGALLTHFQLRPKLVDKVINKQLKDPEIRKLKDEVKAQQRIDFEQVKPEQQKLAGLLNPLPVTEWKWEYVTMDFLFGLLKTSAEVDGILTDGQSERTIQTLEDMLWACALQVKGSWNEYLSLMEFAYNNNYQSSIGMVSYEALYGRMCRTPVC 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10712823 10717835 - ClCG07G006240.2 Cla07g00596 276584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00596 813 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 445 476 - -
Cla07g00596 813 Gene3D - 443 505 IPR043128 -
Cla07g00596 813 Pfam RNase H-like domain found in reverse transcriptase 549 609 IPR041373 -
Cla07g00596 813 MobiDBLite consensus disorder prediction 324 347 - -
Cla07g00596 813 PANTHER - 8 324 - -
Cla07g00596 813 SUPERFAMILY DNA/RNA polymerases 447 615 IPR043502 -
Cla07g00596 813 SUPERFAMILY NHL repeat 34 300 - -
Cla07g00596 813 MobiDBLite consensus disorder prediction 323 347 - -
Cla07g00596 813 Gene3D - 749 813 IPR036397 GO:0003676
Cla07g00596 813 PANTHER NHL DOMAIN PROTEIN 8 324 - -
Cla07g00596 813 CDD RT_LTR 423 522 - -
Cla07g00596 813 CDD RNase_HI_RT_Ty3 549 630 - -
Cla07g00596 813 SUPERFAMILY Ribonuclease H-like 719 801 IPR012337 -
Cla07g00596 813 Gene3D - 24 307 IPR011042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00596 - - - csv:101209037 548.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00596 Cla-Chr7:10712823 Cla02g01032 Cla-Chr2:20794608 2.78E-07 dispersed
Cla10g00573 Cla-Chr10:8254374 Cla07g00596 Cla-Chr7:10712823 8.17E-11 transposed
Cla10g01088 Cla-Chr10:25094650 Cla07g00596 Cla-Chr7:10712823 8.35E-19 transposed
Cla03g00973 Cla-Chr3:17412828 Cla07g00596 Cla-Chr7:10712823 1.87E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g416 . . . . . . Bma14g01594 . Cmo04g01080 . Cma04g01002 Cma04g00059 . Car04g00057 . . . . . . . . . . Cla07g00596 Cam07g0622 Cec07g0688 Cco07g0670 Clacu07g0629 Cmu07g0654 Cre07g1000 . . . . Lsi04g01134 . . Cme10g01499 . . . . Bpe11g01606 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01040 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011671 2 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00596 Cla_Chr07 FPKM 31.720631 30.281315 25.5513 25.208807 15.476521 12.21954 15.124028 0.325945 0.37664 0.438457