Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00605 ATGAGATTCTCTCTCTCCAAAAAATTTCTTCCATTTTTCCATTCCAATCTTTCCCAACTCCTCTCTCAAGATAAACCCACTTACAGAATCTCAACTGAAACCCAAATACATTGTGTAATCGCCGCCACTTTGGTCGGAATAATGGCCGGGATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTGGACTTTGTTCGCGATGTTGTTCGAATGTCGGCGCGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCAATGGCGTCCAATTTCGACCTGTTGATGCGTCTTCGTCTTCTTCTTCTTCTTGTGGCGCTGTGACTGTGAGGGATTCGTCTCAGTTTCCATGGCTTTGTGATTTAGTGACGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGCTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCATATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTGACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTCTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGCGGTGTGGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTAATGGACAGGATAATGACTCTGCCAGAAAGAGTGGGGACCAGGTGAAGAACCCAGATGGAGTTTCAATCCCTGATGATTTTCTATGCCCCATATCCTTGGAAATAATGAGAGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCTACGGGATTAACCAATGGGAAGATCAAAAAGTGTGACGGATCATACCGTGACGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCGATTGAAGAGCGGAGAGCATCTGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCCTTGGTCAATCTATTAACTTCTGATGACGTTTTGATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGATTGATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCAGTTAACTCGATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAGGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGACAACCTTTCTTGTATAAGTAGGCTTGGCGCCGTGATTCCACTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCGAAAAGGAAGGCTACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 2115 43.78 MRFSLSKKFLPFFHSNLSQLLSQDKPTYRISTETQIHCVIAATLVGIMAGIVAGDSDSAPALALLDFVRDVVRMSARTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFNGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLCDLVTALKDTKRLIFIASTFRSCGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSSSEACSNGQDNDSARKSGDQVKNPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11031387 11037659 - ClCG07G006340.2 Cla07g00605 276593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00605 704 Gene3D - 500 604 IPR011989 -
Cla07g00605 704 MobiDBLite consensus disorder prediction 298 322 - -
Cla07g00605 704 Pfam U-box domain 325 395 IPR003613 GO:0004842|GO:0016567
Cla07g00605 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 398 IPR013083 -
Cla07g00605 704 SUPERFAMILY ARM repeat 415 698 IPR016024 -
Cla07g00605 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 506 548 IPR000225 GO:0005515
Cla07g00605 704 Coils Coil 684 704 - -
Cla07g00605 704 Gene3D - 407 499 IPR011989 -
Cla07g00605 704 SUPERFAMILY RING/U-box 321 398 - -
Cla07g00605 704 SMART arm_5 660 700 IPR000225 GO:0005515
Cla07g00605 704 SMART arm_5 577 617 IPR000225 GO:0005515
Cla07g00605 704 SMART arm_5 536 576 IPR000225 GO:0005515
Cla07g00605 704 SMART arm_5 454 494 IPR000225 GO:0005515
Cla07g00605 704 SMART arm_5 495 535 IPR000225 GO:0005515
Cla07g00605 704 SMART arm_5 618 658 IPR000225 GO:0005515
Cla07g00605 704 Coils Coil 200 220 - -
Cla07g00605 704 CDD RING-Ubox_PUB 329 371 IPR045210 -
Cla07g00605 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 507 IPR000225 GO:0005515
Cla07g00605 704 PANTHER U BOX DOMAIN-CONTAINING 67 701 - -
Cla07g00605 704 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 67 701 - -
Cla07g00605 704 Gene3D - 605 703 IPR011989 -
Cla07g00605 704 Pfam Armadillo/beta-catenin-like repeat 455 493 IPR000225 GO:0005515
Cla07g00605 704 Pfam Armadillo/beta-catenin-like repeat 537 575 IPR000225 GO:0005515
Cla07g00605 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 589 IPR000225 GO:0005515
Cla07g00605 704 ProSiteProfiles U-box domain profile. 324 398 IPR003613 GO:0004842|GO:0016567
Cla07g00605 704 SMART Ubox_2 328 391 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00596 Cla07g00605 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00596 Cla-Chr1:6813192 Cla07g00605 Cla-Chr7:11031387 1.16E-177 dispersed
Cla01g01396 Cla-Chr1:28374684 Cla07g00605 Cla-Chr7:11031387 1.34E-10 dispersed
Cla01g02188 Cla-Chr1:35919918 Cla07g00605 Cla-Chr7:11031387 2.05E-59 dispersed
Cla05g02163 Cla-Chr5:33214404 Cla07g00605 Cla-Chr7:11031387 1.58E-153 dispersed
Cla06g00870 Cla-Chr6:13271927 Cla07g00605 Cla-Chr7:11031387 1.54E-18 dispersed
Cla06g01636 Cla-Chr6:29881997 Cla07g00605 Cla-Chr7:11031387 1.74E-38 dispersed
Cla07g00206 Cla-Chr7:2228698 Cla07g00605 Cla-Chr7:11031387 1.98E-85 dispersed
Cla07g00605 Cla-Chr7:11031387 Cla11g00578 Cla-Chr11:6545632 5.08E-96 dispersed
Cla08g00936 Cla-Chr8:21887805 Cla07g00605 Cla-Chr7:11031387 3.89E-20 dispersed
Cla11g01354 Cla-Chr11:27032664 Cla07g00605 Cla-Chr7:11031387 3.84E-39 dispersed
Cla07g00605 Cla-Chr7:11031387 Cla03g00152 Cla-Chr3:1576062 2.59E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00605 - - csv:101221534 1172.53