Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00622 ATGAGGTTATCTACTCAAACCTCAGCACTGACTTACCTCTTTAAGGGCTTCGAAGCTAAACCCGTCGATTCTCCAACCATCTCACAAAAGGTTCTTCTCACAAGCTCAGATTCTAGCTCATGGAAACCCTCTGACCATTTCATGAGAATTTGCCAGGCTCAAATTCTAGATCCTGAGATCCTCCGACCATCTCGTCATGAGGCATTACGGTCCCATTATGTTCTCTCCATGCTACCAAAATTGTGCGTAAGAACAACGCACAAGTTTGCAGGTGATCTGTTTGAAGTTGGTAAATATGGCACTGCAAACATCTCGAATCGACCAAAGTTGCTCCATAAGATATCAGTTGTGATGGCTCACGATGATTGTATTGAGAATGGACAATACAACAATCAATCCAATTCAGTTCCATCAGATCCAGATGATGATTGCAATGTTTCTATTGCGTATATTGCGAGTTTTTTAGCAGCTAAAAGCGGTGAGAACTTTCTCCTGAATTCAACTTGTGAAGAGTGGGTACAAGATAGTCTGGATGGAACCCTGTCTTCTCTGTACTCTGACCTTCCAGATGTAGGAAAGTCTTCAGTAAGTGAAGAATATACTTTAAATGCTGGTTCATCCCTGCTGCCTATGAATACTGAGACTGGAACAATATTGAGTAATCCAGCTGTGGAAGGAGATTCTTCAAAAAAGGAGTTAAAAGCACAAAATAATGCGGTATCTGGCAGGTCATTTCTTGACCAATCAGTTGGTTGCATATCTGGATTAAGTAAGAGGCTCCAGCGCCAGCTTGATGATAGTGGCTTTCACACATTAGGGAAATTACTACATCATTTTCCTCGGGCCTATGCTGATTTACGGAACCCACAGGTTAATATTGATGATGGACAATACTTGATATTTATAGGGAAAGTCTTGTCATCAAGGGGAATCAGAGCTAGTTACTCCTTTTCATTTCTTGAGGTGGTTGTGGGCTGTGAAATTGCAGAAAGAGAAACAAATTCTGGTTGTACGCTTGATAATAATACTGGTGGAAAGAAGATAATTTATTTGCATTTGAAGAAATTCTTTCGTGGTACTCGGTTTACTTTCCAGCCTTTTCTAAGAAGTCTTGGAGAGAAGCATAAGGAGGGAGAGATTGTTTGTGTAAGTGGTAAGGTAAGGACTATGCAATCTGAAGATCATTACGAGATGAGAGAATATAACATTGACGTTCTTCAAGACGAAAAAGATGTGTCATTTTATGCAAAAGAGAGGCCATATCCTATATACCCTTCTAAAAGGGGGTTAAATCCAACATTTCTTAGAGATATTATTGCCAGATCATTGGAAACTAAGGGGCAGCAAGGTTGGGCGGGATTCATAATCTCCTCCAAGTTAAGAAGGCTTAAAACAAAGTTAAAAAGTTGGCTTGTAGAATATGAGAAGAACAAGAAAAATGAGGAAGAATATCTGTTCAAAGAAATTGAAGGAAGAGATCAGCTAGCTGAAAATTTAGAAGAATACTCCTTGGGAGAGGATATAAGAATATCATGGAAGGCAGATTTGATGGACCTCTATTGTGTGGATGAAAGAAATCTCATGCAGAAAAGCTTACTAACCAAGTCATTTCGGGAAATTGAAGAGTTAATTTTAGGATTCTATTCCACACTTTACTCCAAAAGTGACGAGGCTCGGTCTATTCCTCTCAACCTAGACTGGTCGAGAGTGACAAGAGAACAAAACAACCAGCTGGTGGTAAGATTCAGCCAATTAGAGATTAGAAGCGCAATAAAAGATCTGGGGAAAAATAAAGCTCCTGGTCTGGTTGGCTTTACCTCAGAATTCATTCTTAAATTTTGGGACACTTTGAAAAAAACGGAGGATATAGTATTGGTAAAGGATTTTAGGCCTGTCAGCTTAACCACTCTTGTTTATAAAATAACAGCCAAAGTACTTGCTGAAAGAATCAAAGTAATTATGCGAAGCATAATTGCTACTACTCAAAGTGCATTTATTGAAGAAAGACAAATCCTCAATCCTGTCCTCATTGCCAATGAAGCTGTGGAAGAATATAGATCCAAGAAGGAAAAAGGATGGATTCTAAAGCTCGATCTAGAAAAAGCCTTTGATAGAGTGGATTGGGAGTTTATTGAGAAAGTTCTACATGGAAATTTTTTTGATGATTGTTGGATCTCATGGATTATGGGCTGTGTATCCAATCCGAAGTTCTCCGTCTTTATCAACTGTAGACCAAGAGGTAGAATGCTCGCTACTAGAGGGAAATATGAAGGCTTTATTGTGGGAAAGGACAAGATTCATGTCTCTATCCTACAATTTGCGGATGACCACTTGGTGTTTTGTAAATATGAGGACGGAATGATTGAAAATCTAAGGAATACTCTCGATCTCTTTGAATGGTGCTCAGGTAAAAAAATTAATTGGGAGAAATCCGCTCTCTGTGGTATAAATATTGAAGAGACTATGTTTTCAATTGCTGTAAAGTTAAATTGTAAAGTAGAGCACCTCCCTTTCTTGTATCTTGGCCTACTGTTGGGAGGATACCCTAAAAAAGTGTCTTTTTGGCAACCGATCATAGATAATTTGCAAGGAAAACTAGACAAAGGGAGAAGATACAATCTCTCAAGAGGAGGGAAAGCAACTCTTTGTAAGTCAGTCCTCTCCAATTTACCAACTTACTACATGTCTTCCTTTTTGATGCCAGACAAGGTGCTTGCAATCATAGAAAGAATTATGAAGAACTTCTTTTGGGAAAGGCACAAAGAGGGAAAAATAAATCACTTGGTAGAGTGGGAGCTGGTTTCTAAAGCACAAAAGGATGGAGAATTAGGCTTAGGAGGTTTAAAAGCAAAGTTCGGCATTACTGGCCAAATGGGGATGGGAACTTCTCTTTGGCGACAAGTAGTCAAGAGCGTTCATTGGAGTAGTAAGCTCAATTCGCACACTTCAGGCAAGGCAAGTCTCAGCCTTCGTAGCCCTTGGATAAGTATCTCAAGATCGTGGTTAAAAGTGGAAGCACTGGCAGTCTTTAAGCTTGGTAATGGAGGCCGAATTGCATTTTGGCTAGACCTGTGGATAGACTGTCTTCCTTTAAAAAGTAGCTTCCCAAATTTAATCCAGATAGCACTTAATCCTAATGGATCAATTATGGATCATTGGGATTTCTCCACCTTCTCTTGGTCCATCACATTCAGAAGGCTCTTAAAAGAAGATGAAGTTATAGAATTTCAGACTTCATTGAGTATTGTTTCTGAGAAGAAAGTTTGGGATTGCCAAGATAAACTCCAAGAGTCCTCGGAGAGTCAATATTACAATCTGGATCATGCTCTTTGGCCTCCTAAATTGCTCCTCTGTTTTGCAAATATAGTTGCCTTCTCACAACTTGTCTCCAAACAGGACTTTAGAGGAAATGTTCGACAAATTCTAGTAGGGCCAAAGCTCAAAAAAACTCCGAAACTTCTGTGGAATAATGTGGTGAAAACAGTGCTTGCTGATTTATGGTTTGAAAGAAACCAAAGAGTATTCCATGACAAGGAAACCCCATGGTTTGCTCGTTTTGAGTCAACACGTTTGAATGCCTCTCTATGGTGCTCCCTATCAAAGGCTTTTGCGAACTACTCCATACAAGTTGTCAGTTTAAATTGGCAGATCTTCATCTCACCAGACCACAAGTTTTGA 3678 39.45 MRLSTQTSALTYLFKGFEAKPVDSPTISQKVLLTSSDSSSWKPSDHFMRICQAQILDPEILRPSRHEALRSHYVLSMLPKLCVRTTHKFAGDLFEVGKYGTANISNRPKLLHKISVVMAHDDCIENGQYNNQSNSVPSDPDDDCNVSIAYIASFLAAKSGENFLLNSTCEEWVQDSLDGTLSSLYSDLPDVGKSSVSEEYTLNAGSSLLPMNTETGTILSNPAVEGDSSKKELKAQNNAVSGRSFLDQSVGCISGLSKRLQRQLDDSGFHTLGKLLHHFPRAYADLRNPQVNIDDGQYLIFIGKVLSSRGIRASYSFSFLEVVVGCEIAERETNSGCTLDNNTGGKKIIYLHLKKFFRGTRFTFQPFLRSLGEKHKEGEIVCVSGKVRTMQSEDHYEMREYNIDVLQDEKDVSFYAKERPYPIYPSKRGLNPTFLRDIIARSLETKGQQGWAGFIISSKLRRLKTKLKSWLVEYEKNKKNEEEYLFKEIEGRDQLAENLEEYSLGEDIRISWKADLMDLYCVDERNLMQKSLLTKSFREIEELILGFYSTLYSKSDEARSIPLNLDWSRVTREQNNQLVVRFSQLEIRSAIKDLGKNKAPGLVGFTSEFILKFWDTLKKTEDIVLVKDFRPVSLTTLVYKITAKVLAERIKVIMRSIIATTQSAFIEERQILNPVLIANEAVEEYRSKKEKGWILKLDLEKAFDRVDWEFIEKVLHGNFFDDCWISWIMGCVSNPKFSVFINCRPRGRMLATRGKYEGFIVGKDKIHVSILQFADDHLVFCKYEDGMIENLRNTLDLFEWCSGKKINWEKSALCGINIEETMFSIAVKLNCKVEHLPFLYLGLLLGGYPKKVSFWQPIIDNLQGKLDKGRRYNLSRGGKATLCKSVLSNLPTYYMSSFLMPDKVLAIIERIMKNFFWERHKEGKINHLVEWELVSKAQKDGELGLGGLKAKFGITGQMGMGTSLWRQVVKSVHWSSKLNSHTSGKASLSLRSPWISISRSWLKVEALAVFKLGNGGRIAFWLDLWIDCLPLKSSFPNLIQIALNPNGSIMDHWDFSTFSWSITFRRLLKEDEVIEFQTSLSIVSEKKVWDCQDKLQESSESQYYNLDHALWPPKLLLCFANIVAFSQLVSKQDFRGNVRQILVGPKLKKTPKLLWNNVVKTVLADLWFERNQRVFHDKETPWFARFESTRLNASLWCSLSKAFANYSIQVVSLNWQIFISPDHKF 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11487918 11500787 + ClCG07G006500.2 Cla07g00622 276610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00622 1225 PANTHER OS01G0885550 PROTEIN 615 1085 - -
Cla07g00622 1225 Coils Coil 460 480 - -
Cla07g00622 1225 CDD RT_nLTR_like 617 817 - -
Cla07g00622 1225 SUPERFAMILY Nucleic acid-binding proteins 246 444 IPR012340 -
Cla07g00622 1225 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 615 1085 - -
Cla07g00622 1225 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 621 843 IPR000477 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00622 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] - csv:101221994 614.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00622 Cla-Chr7:11487918 Cla10g00702 Cla-Chr10:10944382 1.43E-68 dispersed
Cla01g02528 Cla-Chr1:38941683 Cla07g00622 Cla-Chr7:11487918 3.65E-06 transposed
Cla02g00653 Cla-Chr2:7483845 Cla07g00622 Cla-Chr7:11487918 3.10E-25 transposed
Cla02g01533 Cla-Chr2:29856566 Cla07g00622 Cla-Chr7:11487918 3.02E-56 transposed
Cla03g00783 Cla-Chr3:9583405 Cla07g00622 Cla-Chr7:11487918 5.72E-10 transposed
Cla04g00093 Cla-Chr4:2846131 Cla07g00622 Cla-Chr7:11487918 4.59E-38 transposed
Cla04g00215 Cla-Chr4:6831710 Cla07g00622 Cla-Chr7:11487918 1.57E-12 transposed
Cla04g01245 Cla-Chr4:27567165 Cla07g00622 Cla-Chr7:11487918 2.52E-22 transposed
Cla04g01260 Cla-Chr4:27740679 Cla07g00622 Cla-Chr7:11487918 8.90E-155 transposed
Cla06g00824 Cla-Chr6:11906988 Cla07g00622 Cla-Chr7:11487918 2.88E-128 transposed
Cla06g00953 Cla-Chr6:16625941 Cla07g00622 Cla-Chr7:11487918 5.05E-08 transposed
Cla08g00005 Cla-Chr8:105900 Cla07g00622 Cla-Chr7:11487918 1.04E-19 transposed
Cla08g00525 Cla-Chr8:16082922 Cla07g00622 Cla-Chr7:11487918 4.83E-61 transposed
Cla09g01298 Cla-Chr9:19875911 Cla07g00622 Cla-Chr7:11487918 9.91E-15 transposed
Cla09g01319 Cla-Chr9:20751041 Cla07g00622 Cla-Chr7:11487918 1.19E-08 transposed
Cla09g01416 Cla-Chr9:26524859 Cla07g00622 Cla-Chr7:11487918 3.55E-06 transposed
Cla09g01429 Cla-Chr9:26922936 Cla07g00622 Cla-Chr7:11487918 2.02E-31 transposed
Cla09g01479 Cla-Chr9:28436757 Cla07g00622 Cla-Chr7:11487918 1.09E-13 transposed
Cla09g01591 Cla-Chr9:31755792 Cla07g00622 Cla-Chr7:11487918 3.23E-40 transposed
Cla09g01642 Cla-Chr9:32780234 Cla07g00622 Cla-Chr7:11487918 2.58E-59 transposed
Cla09g01669 Cla-Chr9:33456144 Cla07g00622 Cla-Chr7:11487918 2.26E-21 transposed
Cla10g00854 Cla-Chr10:19570260 Cla07g00622 Cla-Chr7:11487918 9.17E-10 transposed
Cla07g00622 Cla-Chr7:11487918 Cla08g00393 Cla-Chr8:10463058 4.81E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g422 . . . . . . Bma14g01597 . . . . . . . . . . . . . . . . . Cla07g00622 Cam07g0642 . Cco07g0699 . Cmu07g0670 Cre07g1019 Cone13ag0764 . . . Lsi04g01153 . . Cme10g01515 . Blo11g00729 . . Bpe11g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006958 1 2 1 1 1 2 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00622 Cla_Chr07 FPKM 17.300888 18.907192 16.340424 16.5452 19.981405 19.708603 20.705362 11.659733 11.242799 10.96215