Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00640 ATGGACTCTCTTCCTTCTGGTTACCGCCCCAACGTTGGCGTTTGTCTCATCAACTCTGATAATCAGGTTTTTGTTGCTTCTAGACTGAATGTTCCAGGAGCATGGCAGATGCCTCAGGGAGGGATTGAAGATGGTGAAGACCCAAAGTTGGCAGCTGTTAGGGAACTGAGAAAGGAAACTGGAATAGTGTCTGCTGAGATCGTTGCCGAGGTACCCAAATGGTTGACTTACGACTTTCCTCCTTCTGTGAAGACCAAAGTCAATCGTCTCTGGGGCGGGCAATGGCACGGGCAGGCACAAAAATGGTTTCTTATGAGATTGACAAAAGACGATAGTGAGATTAACTTGGACAATGATGAAGCAGACGTTGAATTTGCAGAGTGGAAATGGGCAAACCCCGAAGAAGTTGTTGAACAGGCTGTGGACTACAAGAGACCAACTTATGAGGAGGTAATGAAGACTTTTGCACCTTACCTTGATGGAAACAAAATTTCTACCAAATGCAAATCATCCAAATGGTGA 522 45.4 MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKETGIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12593269 12595791 - ClCG07G006670.1 Cla07g00640 276628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00640 173 ProSiteProfiles Nudix hydrolase domain profile. 7 153 IPR000086 -
Cla07g00640 173 PANTHER BNACNNG74470D PROTEIN 1 173 - -
Cla07g00640 173 PRINTS NUDIX hydrolase family signature 35 49 IPR020476 -
Cla07g00640 173 PRINTS NUDIX hydrolase family signature 49 64 IPR020476 -
Cla07g00640 173 Pfam NUDIX domain 8 149 IPR000086 -
Cla07g00640 173 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 159 - -
Cla07g00640 173 CDD Ap4A_hydrolase_plant_like 7 155 IPR022927 -
Cla07g00640 173 SUPERFAMILY Nudix 7 158 IPR015797 -
Cla07g00640 173 Hamap RNA pyrophosphohydrolase [rppH]. 2 160 IPR022927 -
Cla07g00640 173 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 1 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00640 - - - csv:101222119 358.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02226 Cla-Chr5:33924947 Cla07g00640 Cla-Chr7:12593269 2.65E-74 dispersed
Cla07g00640 Cla-Chr7:12593269 Cla10g01747 Cla-Chr10:33403661 3.49E-50 dispersed
Cla07g00640 Cla-Chr7:12593269 Cla02g00297 Cla-Chr2:2867950 2.03E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00640 Cla_Chr07 FPKM 7.519417 9.552703 8.173163 8.586634 17.416697 18.530907 17.823915 12.418141 12.034004 10.953973