Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00648 ATGGCAATTTTACCCACCACCTCTTCAAGATTGGATCTCTCCATCTCTGTACCAGGCTTCAATTCATTCTCATCACCACTTCCTCCATCTGGGAGAGATTTGGACATGAACAAAGCTCCAGATGAAGAAGAATGGATGATGGGAAGTATGGAGGAAGATGAAGAAAATAACAATGGAAGCAATAATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTTCGACAAAATCATACTTTAAACCCAAAACAGAAGGAGACTTTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGTGCATTATTATTAATTTTCAAAGAGTCGAATATATTTTCAGGAGCAAGTTAAAGCAAACAGAAATGGAATGTGAGTATTTGAAAAGATGGTTCGGGTTATTGACGGAACAGAACAAGAGACTGCAGAAGGAGGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGATTTCACCGCACAGCTGCGAGCCGCTGCCAGCGTCGAATCTCACAATGTGCCCACGCTGCGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGCATTGTCGTTTAA 630 45.4 MAILPTTSSRLDLSISVPGFNSFSSPLPPSGRDLDMNKAPDEEEWMMGSMEEDEENNNGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARCIIINFQRVEYIFRSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12977733 12983475 + ClCG07G006750.2 Cla07g00648 276636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00648 209 SUPERFAMILY Homeodomain-like 46 117 IPR009057 -
Cla07g00648 209 Pfam Homeodomain 64 116 IPR001356 GO:0003677
Cla07g00648 209 Pfam Homeobox associated leucine zipper 134 168 IPR003106 GO:0006355|GO:0043565
Cla07g00648 209 Gene3D - 56 119 - -
Cla07g00648 209 CDD homeodomain 63 117 IPR001356 GO:0003677
Cla07g00648 209 SMART halz 134 177 IPR003106 GO:0006355|GO:0043565
Cla07g00648 209 PANTHER - 1 204 - -
Cla07g00648 209 SMART HOX_1 62 124 IPR001356 GO:0003677
Cla07g00648 209 ProSiteProfiles 'Homeobox' domain profile. 60 116 IPR001356 GO:0003677
Cla07g00648 209 Coils Coil 147 167 - -
Cla07g00648 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00591 Cla-Chr1:6708914 Cla07g00648 Cla-Chr7:12977733 3.35E-78 dispersed
Cla07g00648 Cla-Chr7:12977733 Cla01g01751 Cla-Chr1:32436325 3.39E-46 dispersed
Cla07g00648 Cla-Chr7:12977733 Cla10g01677 Cla-Chr10:32506524 1.95E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61401 PF00046 Homeodomain 3.20E-16 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00648 K09338 - csv:101222713 353.214