Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00673 ATGTTAATAAATGAAGTTCTTCCTCAAGAGAATCTAGATATTGTGATTTTGTTGGAGACAAAAGGGAATAATTTTGAGATGCTGTTTGTAGGTAGTATTTGGAGATTGAGAAGGGTGGATTGGGAAAATCTTGACCTTGTGTGGAAATTTGGGGGCATCTTGTCTTTGTGGAATAGTTGCACCCTTACTGCTATTGAAGTGATCAAGGATGTCTTCTCGTTTTCAATTTCTTCTAGTTTGAAGGATGGTGAGGGTGTCCACGGCCTGATGGGAGTTTATGTCCCTGCTAGAACTAGACGAAAAGTTGAGTGCATGAATGAGTTGGGTGGCCTTTGTGGGGCGAATTGGTGGGCAATTTTAATATCACTCGTTCTCGAGGGTGTGAGAATTGTGGACCTTGCCCCTTTCATTTTGAGAATATGCTTTAGGAGACAACACTCCCTTTTCAAATCCCAGCTTCCTAGCTGGTGGAATGAAATGGTTCAGAAGAAGGAGCTTTTGGCTAAGATTAGGAGAATTGATGAGTTTGATCTTGAGGGCCTTGTGGATGATTCTTTGAAGGCTGAAAGGGATTCCTTTGAGCTTCACTTTGCGGAGGGGATGCTTTCGTCGACTATCTCTGATATGCAAGGGGCTTTTGTGGTAGGGGACAGATCTTGGATCAATGCCTCATTGCTAAAGAAGGGTTTCAGGATTATAGATCTAGGAAGCAGGAAGGAGTGTGTTTTAAGATTGATTTTGGAGAAGCTTATGATCATGTGGATTGGAATTTCTTGGATAAGGAGCCCTAGAGGTAAAGCGATGGTGACGAGAGGCTTTAGACAGGGAGACCTTCTTTCTCCCTTTTTGTTCTTCCTTATAGTGGACGTTCTTAGTAGATTTGTTTGTAAATGTGTTGATGGCAAAGTCCTTGAGCCTTTCAAGGAAAGGGAGGATGGGAAGGATTTGTTCTTGATCTTGAATCATGTATGGCTTCCTTCTTCGTACCTTGGTCTTTCTTTTGGAAGTAAGCCCAAATATGTTGCTTTGTGGGACCTTGTGGTGGATAAAGTTCAAATTAGAGCCCTGCGAGAGGTGTGTAAGAGCCTGGAGAGGTTGATGTGTGATTTTCTCTATGAAGGGATAGAAGAAGGGAAAGGAAAGGGGTCACACTTGATCAGATCGGAGGTTATCAAGAGGATCATTGCTAGTAAACATGACCTCCATCCTTTTGAGTGGTTGTATAAGGGGGTTAAAGGTACTCATCGGAACTTGTGGAAGGATATTTCGAAAGATCTCCCTTCTCTTGTTCACTTGAATCATTTTGTTGTTGACTTTCTTGTGTGGTCTGGGCGTTCTTGTGCCTTTTCTTTTGGGTTATGTTGCTCTCTTTTCAATACGGAAGTAGCGGAAGTGGCGGCTCTTCTTTCCTTACTCGAGGATCATCCCTTTAGTATTGAGAATGAACCTCATAATAGTGAAGCGTTAAGGATTTGTTCACTAAACATGGAGGTGCTTGCTCTCTGCTTAGGCTGTTTTGAGATGGGACAGAAATTTGAACCCATGCCTCTTGCGAGAAGGCATGCGGCCACGGGCAACACGCCCTGGACAAGCATGACTGTGGCACTATGCACGAGGCTGTTTTCACGTAGGATACAACAACCAATAGGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCGCATAGTATTGCTCCAGATGCATCAGGAGATGGTACCATAGTAGCTGCAAATTTGAATCAAGATTACGGAGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACATGGAGGAAGCAAGAGCAATCCGGCACTGAATTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCATTGCTGAACCACCAACTGGTTCCTTGCGCAATCAGAGCCTATCCGTTAGTGTAACTAGAGTCGACTCAAGTGTGCTGGATCGTACAGGCGGTATTGTAAATAATATTCTTGATGGAAAATCAGATCCCACCATGCATGCATCTTCACCTTCATTCTTGGGTATTCATGAGCATAACACATTGAAGAATGAAACTGTCAGCCGAAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCGTTCTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCGTGCAGCATGATAATAGGGGTACCGTAGCAGTGGAAACACTTCAGGAACTTTTCACTGGTGATGGACAATCAAAGAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTCACTCTATTGTCTTTTTGTTTCCTCCCTCCGGAAAGTTCGTTTTATCTTTCGCTTCATAATTCATCTGGTGCAGCGAAAGGACCTACTGCCTTTTTTTAATAAGGGGTTTACGCAGAGTCGGCAGAGGGAAAAGTGTTCAAGTCTGAGCATATTGATTGAAAATTGCAATGGAAATTACTTCAATCAGTAG 2748 43.38 MLINEVLPQENLDIVILLETKGNNFEMLFVGSIWRLRRVDWENLDLVWKFGGILSLWNSCTLTAIEVIKDVFSFSISSSLKDGEGVHGLMGVYVPARTRRKVECMNELGGLCGANWWAILISLVLEGVRIVDLAPFILRICFRRQHSLFKSQLPSWWNEMVQKKELLAKIRRIDEFDLEGLVDDSLKAERDSFELHFAEGMLSSTISDMQGAFVVGDRSWINASLLKKGFRIIDLGSRKECVLRLILEKLMIMWIGISWIRSPRGKAMVTRGFRQGDLLSPFLFFLIVDVLSRFVCKCVDGKVLEPFKEREDGKDLFLILNHVWLPSSYLGLSFGSKPKYVALWDLVVDKVQIRALREVCKSLERLMCDFLYEGIEEGKGKGSHLIRSEVIKRIIASKHDLHPFEWLYKGVKGTHRNLWKDISKDLPSLVHLNHFVVDFLVWSGRSCAFSFGLCCSLFNTEVAEVAALLSLLEDHPFSIENEPHNSEALRICSLNMEVLALCLGCFEMGQKFEPMPLARRHAATGNTPWTSMTVALCTRLFSRRIQQPIGCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNIGLQVANEMAAGGTWRKQEQSGTEFVAEGTFGTVIVHDGDENDKVASQLDIGIAEPPTGSLRNQSLSVSVTRVDSSVLDRTGGIVNNILDGKSDPTMHASSPSFLGIHEHNTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLSLYCLFVSSLRKVRFIFRFIIHLVQRKDLLPFFNKGFTQSRQREKCSSLSILIENCNGNYFNQ 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14469346 14482255 - ClCG07G007040.2 Cla07g00673 276661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00673 915 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 554 852 - -
Cla07g00673 915 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 554 852 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00673 - - - csv:101209775 520.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00434 Cla-Chr7:5841291 Cla07g00673 Cla-Chr7:14469346 5.47E-17 dispersed
Cla07g00673 Cla-Chr7:14469346 Cla11g01134 Cla-Chr11:23296140 0 dispersed
Cla07g00673 Cla-Chr7:14469346 Cla10g00702 Cla-Chr10:10944382 4.78E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01746 . 1 766 MAP Kinase Kinase Kinase Kinase AT1G53165 53.6 7.7e-200 694.1
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.8e-67 252.3
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.5e-65 247.3
Cla11g01746 . 1 763 MAP Kinase Kinase Kinase Kinase AT3G15220 55.5 4.7e-205 711.4
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.5e-67 253.4
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cla11g01134 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.3e-241 833.2
Cla07g00676 . 52 570 MAP Kinase Kinase Kinase Kinase AT1G69220 61.1 1.4e-152 537.3
Cla07g00673 . 552 852 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 1.2e-71 268.5
Cla09g01858 . 1 670 MAP Kinase Kinase Kinase Kinase AT5G14720 65.8 1.8e-249 859.0
Cla05g00470 CCT 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cla10g00086 . 594 1269 MAP Kinase Kinase Kinase Kinase AT4G24100 62.5 5.1e-226 781.2
Cla10g00086 . 598 1269 MAP Kinase Kinase Kinase Kinase AT4G10730 62.1 1.6e-224 776.2
Cla10g00086 . 592 924 MAP Kinase Kinase Kinase Kinase AT1G70430 52.6 1.6e-100 364.0
Cla10g01223 . 1 695 MAP Kinase Kinase Kinase Kinase AT1G79640 56.6 2.6e-205 712.2
Cla09g01858 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.8e-103 372.9
Cla05g00470 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.6 2.1e-143 506.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00673 Cla_Chr07 FPKM 6.998608 8.344102 0.0 0.0 0.0 0.213232 0.0 0.0 0.0 0.0