Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00676 ATGGAGAAGGAAATGAAGAAGACGAGCTTGAAGATGGAGAAGGAAATGACCGAAGACGAGCCTGAAGAAACTGAAGAAGACAGGGGGCCAGAGTCTGTGTTGCAGTTATGGGCTTGTAGCTTCTACTCTGTCAATCACTTCCCAATGGATCCCCCAACCTCCTACCGTAGTCGCAGAACCGCCAACAAATCTGAGCTCTATTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGACAACAATCCTGACGATCGGAATCTTCACCCTCCACGAAGGCCACCCAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGCGGCGACGACGACGACGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGACAGAAATCGCCCTCGAAATCGCTCTATGTCTTCTTCAGTTTCGACGAAGCCTCGAACTTCGCCGCTGCCGTTTATGAACTTTCAGCCGGGGAGCCCCGGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGAGTATTCTACGTTTGTGGTGAGGTCCACGGGGAGGTCGCGGAACAGAGAATCTGTTAGTGGGACTGTTGTTCGAAGGACTGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACATGAGGGGTCCACGATGGGCAGAGCGGTCGCCAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCAAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTATGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTTCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAACCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCATGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGGTAATTCATGCTAATATTGTGTACCAAATAAATGAGGACTAG 1752 48.23 MEKEMKKTSLKMEKEMTEDEPEETEEDRGPESVLQLWACSFYSVNHFPMDPPTSYRSRRTANKSELYSTVVIHSNSDSDSDNNPDDRNLHPPRRPPSEGQDLYATMLYKDVDKPRGDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSMSSSVSTKPRTSPLPFMNFQPGSPGKRAGSEEGDDSEEDDGDEYSTFVVRSTGRSRNRESVSGTVVRRTAGSRSGSRDGGGGHEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKVIHANIVYQINED 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14488772 14499852 - ClCG07G007070.2 Cla07g00676 276664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00676 583 Pfam Protein kinase domain 320 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00676 583 CDD STKc_MAP4K3_like 319 570 - -
Cla07g00676 583 MobiDBLite consensus disorder prediction 1 32 - -
Cla07g00676 583 ProSiteProfiles Protein kinase domain profile. 320 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00676 583 MobiDBLite consensus disorder prediction 79 94 - -
Cla07g00676 583 MobiDBLite consensus disorder prediction 1 17 - -
Cla07g00676 583 MobiDBLite consensus disorder prediction 71 143 - -
Cla07g00676 583 SMART serkin_6 320 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00676 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 262 570 - -
Cla07g00676 583 MobiDBLite consensus disorder prediction 224 247 - -
Cla07g00676 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 262 570 - -
Cla07g00676 583 SUPERFAMILY Protein kinase-like (PK-like) 317 570 IPR011009 -
Cla07g00676 583 MobiDBLite consensus disorder prediction 277 316 - -
Cla07g00676 583 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Cla07g00676 583 MobiDBLite consensus disorder prediction 174 194 - -
Cla07g00676 583 MobiDBLite consensus disorder prediction 164 265 - -
Cla07g00676 583 Gene3D Transferase(Phosphotransferase) domain 1 316 582 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00676 - - - csv:101209775 882.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00676 Cla-Chr7:14488772 Cla11g01134 Cla-Chr11:23296140 0 dispersed
Cla07g00676 Cla-Chr7:14488772 Cla05g00470 Cla-Chr5:4284570 7.56E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01746 . 1 766 MAP Kinase Kinase Kinase Kinase AT1G53165 53.6 7.7e-200 694.1
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.8e-67 252.3
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.5e-65 247.3
Cla11g01746 . 1 763 MAP Kinase Kinase Kinase Kinase AT3G15220 55.5 4.7e-205 711.4
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.5e-67 253.4
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cla11g01134 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.3e-241 833.2
Cla07g00676 . 52 570 MAP Kinase Kinase Kinase Kinase AT1G69220 61.1 1.4e-152 537.3
Cla07g00673 . 552 852 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 1.2e-71 268.5
Cla09g01858 . 1 670 MAP Kinase Kinase Kinase Kinase AT5G14720 65.8 1.8e-249 859.0
Cla05g00470 CCT 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cla10g00086 . 594 1269 MAP Kinase Kinase Kinase Kinase AT4G24100 62.5 5.1e-226 781.2
Cla10g00086 . 598 1269 MAP Kinase Kinase Kinase Kinase AT4G10730 62.1 1.6e-224 776.2
Cla10g00086 . 592 924 MAP Kinase Kinase Kinase Kinase AT1G70430 52.6 1.6e-100 364.0
Cla10g01223 . 1 695 MAP Kinase Kinase Kinase Kinase AT1G79640 56.6 2.6e-205 712.2
Cla09g01858 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.8e-103 372.9
Cla05g00470 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.6 2.1e-143 506.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80680 PF00069 Pkinase 6.00E-66 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00676 Cla_Chr07 FPKM 0.0 0.0 1.079526 0.792738 10.70592 12.520878 10.552758 0.0 0.194482 0.0